RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ZNF891A8MT65 544 aaPredicted RBP9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 GABRA2P47869 451 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 TLE1Q04724 770 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 PTDSS2Q9BVG9 487 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 DECR2Q9NUI1 292 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 TMEM30CPA0ZSE6 113 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 CXorf65A6NEN9 183 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 GALR2O43603 387 aaPredicted RBP9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 CDS2O95674 445 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 ST6GAL1P15907 406 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 WDR38Q5JTN6 314 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 PWWP2BQ6NUJ5 590 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 NPEPL1Q8NDH3 523 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 CA10Q9NS85 328 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 MMP9P14780 707 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 GABRA1P14867 456 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 ALG14Q96F25 216 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 RNF2Q99496 336 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 ATP5SQ99766 215 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 PPP1R14DQ9NXH3 145 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 RASL12Q9NYN1 266 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 CDC14BO60729 498 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 PRAMEF5Q5TYX0 476 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 PRAMEF6Q5VXH4 476 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 RPL7L1Q6DKI1 246 aaKnown RBP9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 TMEM88Q6PEY1 159 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 TSEN54Q7Z6J9 526 aaKnown RBP9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 TNS1Q9HBL0 1735 aaKnown RBP9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 CTSVO60911 334 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 FSTP19883 344 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 ZBTB25P24278 435 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 KISS1Q15726 138 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 TXNDC17Q9BRA2 123 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 KMT2EQ8IZD2 1858 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 SPTY2D1-AS1A0A0U1RR47 76 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 A0A1W2PPC4 97 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 B4GALT3O60512 393 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 CA11O75493 328 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 EPPINO95925 133 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 CRHP06850 196 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 CD200P41217 278 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 VAMP8Q9BV40 100 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 KIAA2026Q5HYC2 2103 aa9.21□□□□□ -0.93
CCDC88A-202ENST00000336838 ASCL1P50553 236 aa9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 FAM27D1Q5T7N8 215 aa9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 DYNLRB1Q9NP97 96 aa9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 B3GALT4O96024 378 aa9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 MGST1P10620 155 aaKnown RBP9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 HOXD11P31277 338 aaPredicted RBP9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 PRAMEF20Q5VT98 475 aa9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 TP53I13Q8NBR0 393 aaPredicted RBP9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 ADPRHL1Q8NDY3 354 aa9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 RHBDD1Q8TEB9 315 aa9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 C2CD4CQ8TF44 421 aa9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 NUDT8Q8WV74 236 aa9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 NGFRP08138 427 aa9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 ELLP55199 621 aaPredicted RBP9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 EIF4EBP2Q13542 120 aaPredicted RBP9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 RUNX2Q13950 521 aa9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 NHLRC1Q6VVB1 395 aa9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 OR8U1Q8NH10 309 aa9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 CLDN23Q96B33 292 aa9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 MYBPHQ13203 477 aa9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 C6orf15Q6UXA7 325 aaPredicted RBP9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 SSX7Q7RTT5 188 aa9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 OR4D10Q8NGI6 311 aa9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 C20orf24Q9BUV8 137 aa9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 ZNF768Q9H5H4 540 aaKnown RBP9.21□□□□□ -0.94
CCDC88A-202ENST00000336838 A0A0B4J203 849 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 FFAR1O14842 300 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 ZGLP1P0C6A0 271 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 THNSL2Q86YJ6 484 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 TINAGL1Q9GZM7 467 aaPredicted RBP9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 ZDHHC11Q9H8X9 412 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 RLFQ13129 1914 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 A6NL46 340 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 HRASP01112 189 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 FBXO34Q9NWN3 711 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 SLC2A1P11166 492 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 CSRP3P50461 194 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 C20orf196Q8IYI0 205 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 SARGQ9BW04 601 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 CHEK1O14757 476 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 RFC3P40938 356 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 CD200R1LQ6Q8B3 271 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 ANAPC1Q9H1A4 1944 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 TRAF3IP2O43734 574 aaPredicted RBP9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 PDCD6O75340 191 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 HPP00738 406 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 CNN1P51911 297 aaKnown RBP9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 GNG3P63215 75 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 OR51H1Q8NH63 302 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 POM121Q96HA1 1249 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 SF3B5Q9BWJ5 86 aaKnown RBP9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 HCSTQ9UBK5 93 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 CCDC163A0A0D9SF12 145 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 YY2O15391 372 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 DHHO43323 396 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms