RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ICAM5Q9UMF0 924 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 A0A1B0GUL6 1792 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 TGIF2LXQ8IUE1 241 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 ANKLE1Q8NAG6 615 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 STARD4Q96DR4 205 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 ELOVL1Q9BW60 279 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 ICE1Q9Y2F5 2266 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 H0YIG0 161 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 SFT2D2O95562 160 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 CRYAAP02489 173 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 PPICP45877 212 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 SRSF9Q13242 221 aaKnown RBP eCLIP12.48□□□□□ -0.41
CSPG4-201ENST00000308508 RFLNAQ6ZTI6 216 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 YRDCQ86U90 279 aaKnown RBP12.48□□□□□ -0.41
CSPG4-201ENST00000308508 ANGPTL4Q9BY76 406 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 SEBOXQ9HB31 216 aaPredicted RBP12.48□□□□□ -0.41
CSPG4-201ENST00000308508 ACAA2P42765 397 aaKnown RBP12.47□□□□□ -0.41
CSPG4-201ENST00000308508 SUCLG1P53597 346 aaKnown RBP12.47□□□□□ -0.41
CSPG4-201ENST00000308508 VWA2Q5GFL6 755 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 TMEM251Q8N6I4 163 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 OR4A4PQ8NGN8 299 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 SPSB1Q96BD6 273 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 THOC3Q96J01 351 aaKnown RBP12.47□□□□□ -0.41
CSPG4-201ENST00000308508 IGLV3-10A0A075B6K4 115 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 GFYI3L273 518 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 HLA-DRB5Q30154 266 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 Q7L0L9 218 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 DOLPP1Q86YN1 238 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 CRXO43186 299 aaPredicted RBP12.47□□□□□ -0.41
CSPG4-201ENST00000308508 NPY1RP25929 384 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 CAMPP49913 170 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 HIST3H3Q16695 136 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 HSF5Q4G112 596 aaPredicted RBP12.47□□□□□ -0.41
CSPG4-201ENST00000308508 NKAIN1Q4KMZ8 207 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 AWAT1Q58HT5 328 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 FAM78AQ5JUQ0 283 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 RLN3Q8WXF3 142 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 TRAF4Q9BUZ4 470 aaPredicted RBP12.47□□□□□ -0.41
CSPG4-201ENST00000308508 MSL2Q9HCI7 577 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 SCGB1A1P11684 91 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 CCL11P51671 97 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 FAM27D1Q5T7N8 215 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 OR1L1Q8NH94 360 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 ASXL3Q9C0F0 2248 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 LEUTXA8MZ59 168 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 PPP1R1AQ13522 171 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 SLC35E4Q6ICL7 350 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 ZNF383Q8NA42 475 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 ZPBPQ9BS86 351 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 MTFP1Q9UDX5 166 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 HDGFL3Q9Y3E1 203 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 RPS4Y1P22090 263 aaKnown RBP12.47□□□□□ -0.41
CSPG4-201ENST00000308508 MDH2P40926 338 aaKnown RBP12.47□□□□□ -0.41
CSPG4-201ENST00000308508 COL5A1-AS1Q5SY13 56 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 NCMAPQ5T1S8 102 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 PRSS54Q6PEW0 395 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 ZNF256Q9Y2P7 627 aaPredicted RBP12.47□□□□□ -0.41
CSPG4-201ENST00000308508 A0A096LPE4 126 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 A0A1W2PPZ6 126 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 WNT1P04628 370 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 Q56UQ5 140 aa12.47□□□□□ -0.41
CSPG4-201ENST00000308508 ALKAL1Q6UXT8 129 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 OR10G4Q8NGN3 311 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 OR10G9Q8NGN4 311 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 OR10G7Q8NGN6 311 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 ZNF391Q9UJN7 358 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 MS4A18H0YCH9 400 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 FAM157BP0CG42 384 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 MS4A18Q3C1V0 323 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 MISP3Q96FF7 219 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 RNF2Q99496 336 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 PITPNC1Q9UKF7 332 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 SCN3AQ9NY46 2000 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 A0A1W2PN81 502 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 TNFSF11O14788 317 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 TAAR3PQ9P1P4 343 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 PROCRQ9UNN8 238 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 C3orf85A0A1B0GTC6 90 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 TMEM272A0A1B0GTI8 110 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 OR1D5P58170 312 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 INSM1Q01101 510 aaPredicted RBP12.46□□□□□ -0.41
CSPG4-201ENST00000308508 BSXQ3C1V8 233 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 OR2C3Q8N628 320 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 SIRT6Q8N6T7 355 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 SLC25A22Q9H936 323 aa12.46□□□□□ -0.41
CSPG4-201ENST00000308508 M0R1B8 84 aa12.46□□□□□ -0.42
CSPG4-201ENST00000308508 FAHP16930 419 aa12.46□□□□□ -0.42
CSPG4-201ENST00000308508 SSX1Q16384 188 aa12.46□□□□□ -0.42
CSPG4-201ENST00000308508 LRRC10Q5BKY1 277 aa12.46□□□□□ -0.42
CSPG4-201ENST00000308508 TRAT1Q6PIZ9 186 aa12.46□□□□□ -0.42
CSPG4-201ENST00000308508 BVESQ8NE79 360 aa12.46□□□□□ -0.42
CSPG4-201ENST00000308508 NOXO1Q8NFA2 376 aa12.46□□□□□ -0.42
CSPG4-201ENST00000308508 APOBEC3DQ96AK3 386 aaPredicted RBP12.46□□□□□ -0.42
CSPG4-201ENST00000308508 N4BP2Q86UW6 1770 aaPredicted RBP12.46□□□□□ -0.42
CSPG4-201ENST00000308508 SPRY1O43609 319 aaPredicted RBP12.46□□□□□ -0.42
CSPG4-201ENST00000308508 SP6Q3SY56 376 aa12.46□□□□□ -0.42
CSPG4-201ENST00000308508 OR2D3Q8NGH3 330 aa12.46□□□□□ -0.42
CSPG4-201ENST00000308508 OTOSQ8NHW6 89 aa12.46□□□□□ -0.42
CSPG4-201ENST00000308508 NAA60Q9H7X0 242 aa12.46□□□□□ -0.42
CSPG4-201ENST00000308508 TMEM167BQ9NRX6 74 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms