RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 KIR2DL1P43626 348 aaPredicted RBP11.44□□□□□ -0.58
USP40-201ENST00000251722 PRICKLE4Q2TBC4 344 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.44□□□□□ -0.58
USP40-201ENST00000251722 HMSDA8MTL9 139 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 FCMRO60667 390 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 ENDOGQ14249 297 aaKnown RBP11.44□□□□□ -0.58
USP40-201ENST00000251722 CDK5R1Q15078 307 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 Q6ZN92 141 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 Q6ZPB1 254 aaPredicted RBP11.44□□□□□ -0.58
USP40-201ENST00000251722 RAB1CQ92928 201 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 RHOVQ96L33 236 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 WDFY2Q96P53 400 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 SERGEFQ9UGK8 458 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 PITPNC1Q9UKF7 332 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 YTHDF2Q9Y5A9 579 aaKnown RBP11.44□□□□□ -0.58
USP40-201ENST00000251722 CITO14578 2027 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 TRAV1-2A0A0B4J238 106 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 ARPC3O15145 178 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 OR10J4P0C629 311 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 HFEQ30201 348 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 NSUN5P2Q63ZY6 315 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 KIRREL2Q6UWL6 708 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 THNSL2Q86YJ6 484 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 OSR2Q8N2R0 312 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 OR13D1Q8NGV5 346 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 RND1Q92730 232 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 AKR1E2Q96JD6 320 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 RPP25Q9BUL9 199 aaKnown RBP11.44□□□□□ -0.58
USP40-201ENST00000251722 DDA1Q9BW61 102 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 FLVCR2Q9UPI3 526 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 M0R2Z0 102 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 VMA21Q3ZAQ7 101 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 OR4A47Q6IF82 309 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 ZNF547Q8IVP9 402 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 PLPP7Q8NBV4 271 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 OR4A4PQ8NGN8 299 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 TP53RKQ96S44 253 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 M0R1X1 148 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 HSPB6O14558 160 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 ST8SIA3O43173 380 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 CD3EP07766 207 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 FAM24BQ8N5W8 94 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 OR8U1Q8NH10 309 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 GPX8Q8TED1 209 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 CHAC2Q8WUX2 184 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 RSRP1Q9BUV0 290 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 PMP2P02689 132 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 CD37P11049 281 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 HLA-DOBP13765 273 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 CEACAM3P40198 252 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 IAH1Q2TAA2 248 aaPredicted RBP11.43□□□□□ -0.58
USP40-201ENST00000251722 FFAR4Q5NUL3 377 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 TMEM215Q68D42 235 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 TMED6Q8WW62 240 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 SIGLEC11Q96RL6 698 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 COMMD5Q9GZQ3 224 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 GNB3P16520 340 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 ZNF17P17021 662 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 STARD6P59095 220 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 ZNF385CQ66K41 422 aaPredicted RBP11.43□□□□□ -0.58
USP40-201ENST00000251722 RBM45Q8IUH3 476 aaKnown RBP11.43□□□□□ -0.58
USP40-201ENST00000251722 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.43□□□□□ -0.58
USP40-201ENST00000251722 SLC35D1Q9NTN3 355 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 METTL1Q9UBP6 276 aaKnown RBP11.43□□□□□ -0.58
USP40-201ENST00000251722 A4GNTQ9UNA3 340 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 EVPLQ92817 2033 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 XKRY2A2RUG3 117 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 HS3ST1O14792 307 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 PRICKLE3O43900 615 aaPredicted RBP11.43□□□□□ -0.58
USP40-201ENST00000251722 BMP5P22003 454 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 WIPI1Q5MNZ9 446 aaPredicted RBP11.43□□□□□ -0.58
USP40-201ENST00000251722 C17orf47Q8NEP4 570 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 ROBO4Q8WZ75 1007 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 C10orf35Q96D05 121 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 GNPNAT1Q96EK6 184 aaPredicted RBP11.43□□□□□ -0.58
USP40-201ENST00000251722 RAB33BQ9H082 229 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 MIXL1Q9H2W2 232 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 MMP25Q9NPA2 562 aa11.43□□□□□ -0.58
USP40-201ENST00000251722 AVPR2P30518 371 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 RAC3P60763 192 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 CALHM3Q86XJ0 350 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 CBLN2Q8IUK8 224 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 NDFIP1Q9BT67 221 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 OR51I2Q9H344 312 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 GPR31O00270 319 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 HSD17B6O14756 317 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 ETHE1O95571 254 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 LRRTM1Q86UE6 522 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 TMEM99Q8N816 258 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 HSD17B11Q8NBQ5 300 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 BHLHE23Q8NDY6 225 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 IL5P05113 134 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 B4GALT1P15291 398 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 NKX2-1P43699 371 aaPredicted RBP11.42□□□□□ -0.58
USP40-201ENST00000251722 ZNF117Q03924 483 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 MICBQ29980 383 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 BTNL3Q6UXE8 466 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 OR8B4Q96RC9 309 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 MARVELD1Q9BSK0 173 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 TCRBV5S2A0A599 114 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms