RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 SPSB1Q96BD6 273 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 ZNF479Q96JC4 524 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 PDCD1LG2Q9BQ51 273 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 MAGT1Q9H0U3 335 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 COPS7AQ9UBW8 275 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 PSG11Q9UQ72 335 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 MRPS17Q9Y2R5 130 aaKnown RBP5.14□□□□□ -1.59
SCN1A-216ENST00000637968 NEUROG3Q9Y4Z2 214 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 LOC100289279A0A1B0GTE1 492 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 OR5B21A6NL26 309 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 HSPB2A8KAH6 182 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 C9orf172C9J069 976 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 CD52P31358 61 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 ARL4DP49703 201 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 METAP1P53582 386 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 GAS1P54826 345 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 PITX1P78337 314 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-216ENST00000637968 SRSF4Q08170 494 aaKnown RBP5.14□□□□□ -1.59
SCN1A-216ENST00000637968 EFEMP1Q12805 493 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 P2RY6Q15077 328 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 NSDHLQ15738 373 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 HSPB2Q16082 182 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 FIGLAQ6QHK4 219 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 MRPL21Q7Z2W9 205 aaKnown RBP5.14□□□□□ -1.59
SCN1A-216ENST00000637968 TRAPPC6BQ86SZ2 158 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 BMPERQ8N8U9 685 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 ZNF439Q8NDP4 499 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 C17orf47Q8NEP4 570 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 KHSRPQ92945 711 aaKnown RBP eCLIP5.14□□□□□ -1.596e-7■■■□□ 18.9
SCN1A-216ENST00000637968 PSMG3Q9BT73 122 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-216ENST00000637968 PLA2G12AQ9BZM1 189 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 C1orf198Q9H425 327 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 GEMIN7Q9H840 131 aaKnown RBP5.14□□□□□ -1.59
SCN1A-216ENST00000637968 NEUROD4Q9HD90 331 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 CYTL1Q9NRR1 136 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 SLC45A2Q9UMX9 530 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 SRPK3Q9UPE1 567 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 TBL2Q9Y4P3 447 aaKnown RBP5.14□□□□□ -1.59
SCN1A-216ENST00000637968 NUP214P35658 2090 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-216ENST00000637968 KCNE1BA0A087WTH5 132 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 CEBPZOSA8MTT3 80 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 OR4Q2P0C623 313 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 JMJD7P0C870 316 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 DUSP3P51452 185 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-216ENST00000637968 ARFRP1Q13795 201 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 ABCA11PQ4W5N1 156 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 TMEM128Q5BJH2 165 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 AMMECR1LQ6DCA0 310 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 CFAP52Q8N1V2 620 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 OR4P4Q8NGL7 312 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 SLC2A12Q8TD20 617 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 FCRL2Q96LA5 508 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-216ENST00000637968 GUCD1Q96NT3 240 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 CHRDL1Q9BU40 450 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 EHFQ9NZC4 300 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 PPIAL4AQ9Y536 164 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 SIRT4Q9Y6E7 314 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-216ENST00000637968 ARAP2Q8WZ64 1704 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 GRM6O15303 877 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 HCRTO43612 131 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 FBXO45P0C2W1 286 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 IL12BP29460 328 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 ACVRL1P37023 503 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 CEACAM3P40198 252 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 TM4SF4P48230 202 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 RHOAP61586 193 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 TCTN1Q2MV58 587 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 ZNF684Q5T5D7 378 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 DMKNQ6E0U4 476 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-216ENST00000637968 WBP2NLQ6ICG8 309 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 BHLHA15Q7RTS1 189 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-216ENST00000637968 ERASQ7Z444 233 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 BOD1L2Q8IYS8 172 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 PNKDQ8N490 385 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 C17orf78Q8N4C9 275 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 ARL14EPQ8N8R7 260 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-216ENST00000637968 OR5H2Q8NGV7 314 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 CXorf40AQ8TE69 158 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 FAM3DQ96BQ1 224 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 GNPNAT1Q96EK6 184 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-216ENST00000637968 ATP5SQ99766 215 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 RARRES2Q99969 163 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 IGHV1-69-2A0A0G2JMI3 117 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 MED19A0JLT2 244 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-216ENST00000637968 SLC22A20A6NK97 555 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 OR4C45A6NMZ5 311 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 GDF9O60383 454 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 RHOCP08134 193 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 PRSS56P0CW18 603 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 CRISP2P16562 243 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 SLC6A6P31641 620 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 RAC3P60763 192 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 PPP1CBP62140 327 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 SQSTM1Q13501 440 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 C2orf76Q3KRA6 126 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 TMEM177Q53S58 311 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 MED25Q71SY5 747 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 RBM45Q8IUH3 476 aaKnown RBP5.13□□□□□ -1.59
SCN1A-216ENST00000637968 SYS1Q8N2H4 156 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 GPR32P1Q8NGA4 272 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms