RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 PLCXD3Q63HM9 321 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 SEZ6L2Q6UXD5 910 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 ASCL4Q6XD76 172 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 TMEM200AQ86VY9 491 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 ANGPTL5Q86XS5 388 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 OR56B1Q8NGI3 324 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 FCAMRQ8WWV6 532 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 THAP7Q9BT49 309 aaPredicted RBP9.11□□□□□ -0.95
CLN3-248ENST00000636355 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.11□□□□□ -0.95
CLN3-248ENST00000636355 RBFOX1Q9NWB1 397 aaKnown RBP9.11□□□□□ -0.95
CLN3-248ENST00000636355 COPZ2Q9P299 210 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 MEMO1Q9Y316 297 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 STARD10Q9Y365 291 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 DSPP15924 2871 aaKnown RBP9.1□□□□□ -0.95
CLN3-248ENST00000636355 IGHV2OR16-5A0A0B4J2B6 119 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 PQLC2LA1A4F0 135 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 NAP1L6A6NFF2 107 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 CENPXA8MT69 81 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 PRSS44E7EML9 344 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 H3BUI4 141 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 LYRM1O43325 122 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 TPD52L2O43399 206 aaKnown RBP9.1□□□□□ -0.95
CLN3-248ENST00000636355 AKR7A2O43488 359 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 CDC14BO60729 498 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 CA11O75493 328 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 KDM4BO94953 1096 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 NGFP01138 241 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 LPLP06858 475 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 GSTP1P09211 210 aaKnown RBP9.1□□□□□ -0.95
CLN3-248ENST00000636355 GSTT2BP0CG30 244 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 BMP5P22003 454 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 CCKARP32238 428 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 FAUP35544 74 aaKnown RBP9.1□□□□□ -0.95
CLN3-248ENST00000636355 ASCL1P50553 236 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 EFNB2P52799 333 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 UCP2P55851 309 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 MTCP1P56278 107 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 RPS27AP62979 156 aaKnown RBP9.1□□□□□ -0.95
CLN3-248ENST00000636355 PRDX4Q13162 271 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 CEACAM21Q3KPI0 293 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 MBNL2Q5VZF2 373 aaKnown RBP9.1□□□□□ -0.95
CLN3-248ENST00000636355 MTFR2Q6P444 385 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 CRIP3Q6Q6R5 217 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 GLIPR1L1Q6UWM5 242 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 MYPOPQ86VE0 399 aaPredicted RBP9.1□□□□□ -0.95
CLN3-248ENST00000636355 SNX29P2Q8IUI4 249 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 TOMM5Q8N4H5 51 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 PAQR4Q8N4S7 273 aaPredicted RBP9.1□□□□□ -0.95
CLN3-248ENST00000636355 FAM89BQ8N5H3 189 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 RELL2Q8NC24 303 aaPredicted RBP9.1□□□□□ -0.95
CLN3-248ENST00000636355 OR5A2Q8NGI9 324 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 TNFAIP8L1Q8WVP5 186 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 S100PBPQ96BU1 408 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 TM2D1Q9BX74 207 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 ACTR6Q9GZN1 396 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 ATG5Q9H1Y0 275 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 OCEL1Q9H607 264 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 GPR173Q9NS66 373 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 PTTG3PQ9NZH4 202 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 SPEF1Q9Y4P9 236 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 BSNQ9UPA5 3926 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 LAMA5O15230 3695 aa9.1□□□□□ -0.95
CLN3-248ENST00000636355 IGHV1-18A0A0C4DH31 117 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 A0A1B0GWJ7 208 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 FAM90A10PA6NDY2 464 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 FAM90A18PA6NE21 464 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 FAM90A16PA6NEW6 464 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 FAM90A20PA6NIJ5 464 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 A6NIN4 97 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 FAM90A8PA6NJQ4 464 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 FAM90A7PA6NKC0 464 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 FAM90A22PA8MWA6 464 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 FAM90A12PA8MX19 464 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 FAM90A5PA8MXJ8 464 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 FAM90A23PA8MXZ1 464 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 C16orf97H3BN30 126 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 H7C417 338 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 RAB27BO00194 218 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 CRYAAP02489 173 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 MELTFP08582 738 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 CELA3BP08861 270 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 CSF1P09603 554 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 FAM90A15PP0C7V4 464 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 FAM90A13PP0C7W8 464 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 FAM90A14PP0C7W9 464 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 FAM90A24PP0C7X0 464 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 CCL2P13500 99 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 TBPP20226 339 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 KITLGP21583 273 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 DGCR2P98153 550 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 NAAAQ02083 359 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 PNLIPRP3Q17RR3 467 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 NHLRC3Q5JS37 347 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 C3P1Q6ZMU1 363 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 Q8NFD4 153 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 LRRC46Q96FV0 321 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 RTL8AQ9BWD3 113 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 PKIBQ9C010 78 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 METTL9Q9H1A3 318 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 AUNIPQ9H7T9 357 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 199.8 ms