RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 PTBP1P26599 531 aaKnown RBP eCLIP13.71□□□□□ -0.215e-6■■■□□ 16.4
CPSF1-213ENST00000620219 AGTR1P30556 359 aa13.71□□□□□ -0.21
CPSF1-213ENST00000620219 NTF4P34130 210 aa13.71□□□□□ -0.21
CPSF1-213ENST00000620219 TAS2R19P59542 299 aa13.71□□□□□ -0.21
CPSF1-213ENST00000620219 ATXN7L3Q14CW9 347 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-213ENST00000620219 PLEKHN1Q494U1 663 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-213ENST00000620219 ABCA11PQ4W5N1 156 aa13.71□□□□□ -0.21
CPSF1-213ENST00000620219 MGAT4CQ9UBM8 478 aa13.71□□□□□ -0.21
CPSF1-213ENST00000620219 NUBP2Q9Y5Y2 271 aa13.71□□□□□ -0.21
CPSF1-213ENST00000620219 ETV2O00321 342 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-213ENST00000620219 WDR1O75083 606 aa13.71□□□□□ -0.21
CPSF1-213ENST00000620219 ABLIM2Q6H8Q1 611 aa13.71□□□□□ -0.21
CPSF1-213ENST00000620219 OR4K15Q8NH41 348 aa13.71□□□□□ -0.21
CPSF1-213ENST00000620219 NICN1Q9BSH3 213 aa13.71□□□□□ -0.21
CPSF1-213ENST00000620219 PLSCR3Q9NRY6 295 aa13.71□□□□□ -0.21
CPSF1-213ENST00000620219 MEX3AA1L020 520 aaKnown RBP13.71□□□□□ -0.22
CPSF1-213ENST00000620219 GLSO94925 669 aaPredicted RBP13.71□□□□□ -0.22
CPSF1-213ENST00000620219 RRAS2P62070 204 aaPredicted RBP13.71□□□□□ -0.22
CPSF1-213ENST00000620219 LINC00303Q3SY05 128 aa13.71□□□□□ -0.22
CPSF1-213ENST00000620219 FBXL14Q8N1E6 418 aa13.71□□□□□ -0.22
CPSF1-213ENST00000620219 ZNF610Q8N9Z0 462 aa13.71□□□□□ -0.22
CPSF1-213ENST00000620219 CCDC107Q8WV48 283 aa13.71□□□□□ -0.22
CPSF1-213ENST00000620219 TRIM63Q969Q1 353 aa13.71□□□□□ -0.22
CPSF1-213ENST00000620219 TRBV5-7A0A0A0MS05 114 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-213ENST00000620219 HS3ST1O14792 307 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 MOGAT2Q3SYC2 334 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 IL1F10Q8WWZ1 152 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 EHFQ9NZC4 300 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 NUP210LQ5VU65 1888 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 DDOSTP39656 456 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 GVQW1Q8N7I0 195 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 RDH5Q92781 318 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 COPZ2Q9P299 210 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 GPR160Q9UJ42 338 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 BCL2A1Q16548 175 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 OR52B4Q8NGK2 314 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 OR4C16Q8NGL9 310 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 ARHGAP5-AS1Q96IT6 56 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 ST3GAL6Q9Y274 331 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 MRPS18CQ9Y3D5 142 aaKnown RBP13.7□□□□□ -0.22
CPSF1-213ENST00000620219 CREBL2O60519 120 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-213ENST00000620219 SCGNO76038 276 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 CRYAAP02489 173 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 CD1AP06126 327 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 ZDHHC23Q8IYP9 409 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 TMEM104Q8NE00 496 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 OR2T35Q8NGX2 323 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 OR6F1Q8NGZ6 308 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 SLAMF9Q96A28 289 aa13.7□□□□□ -0.22
CPSF1-213ENST00000620219 ZNF629Q9UEG4 869 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-213ENST00000620219 ZNF230Q9UIE0 474 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-213ENST00000620219 INTS1Q8N201 2190 aaKnown RBP13.7□□□□□ -0.22
CPSF1-213ENST00000620219 SOCS1O15524 211 aa13.69□□□□□ -0.22
CPSF1-213ENST00000620219 BPNT1O95861 308 aa13.69□□□□□ -0.22
CPSF1-213ENST00000620219 VSIG8P0DPA2 414 aa13.69□□□□□ -0.22
CPSF1-213ENST00000620219 SLC6A1P30531 599 aa13.69□□□□□ -0.22
CPSF1-213ENST00000620219 PRDX4Q13162 271 aa13.69□□□□□ -0.22
CPSF1-213ENST00000620219 RNF144BQ7Z419 303 aa13.69□□□□□ -0.22
CPSF1-213ENST00000620219 OR4D10Q8NGI6 311 aa13.69□□□□□ -0.22
CPSF1-213ENST00000620219 ZNF486Q96H40 463 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-213ENST00000620219 SIX6O95475 246 aa13.69□□□□□ -0.22
CPSF1-213ENST00000620219 LPLP06858 475 aa13.69□□□□□ -0.22
CPSF1-213ENST00000620219 RAD52P43351 418 aa13.69□□□□□ -0.22
CPSF1-213ENST00000620219 C9orf106Q8NAJ2 232 aa13.69□□□□□ -0.22
CPSF1-213ENST00000620219 OR10R2Q8NGX6 335 aa13.69□□□□□ -0.22
CPSF1-213ENST00000620219 ADGRG7Q96K78 797 aa13.69□□□□□ -0.22
CPSF1-213ENST00000620219 METTL17Q9H7H0 456 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-213ENST00000620219 SPEF1Q9Y4P9 236 aa13.69□□□□□ -0.22
CPSF1-213ENST00000620219 PRKACAP17612 351 aa13.69□□□□□ -0.22
CPSF1-213ENST00000620219 GLP1RP43220 463 aa13.69□□□□□ -0.22
CPSF1-213ENST00000620219 GRPEL2Q8TAA5 225 aa13.69□□□□□ -0.22
CPSF1-213ENST00000620219 FOXD3Q9UJU5 478 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-213ENST00000620219 A0A0B4J293 547 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 FABP7O15540 132 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 NXPH2O95156 264 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 FDX2Q6P4F2 183 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 C17orf107Q6ZR85 190 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 C6orf201Q7Z4U5 140 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 NOXA1Q86UR1 476 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 RNF138Q8WVD3 245 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 TINAGL1Q9GZM7 467 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-213ENST00000620219 MGAQ8IWI9 3026 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 MED13LQ71F56 2210 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 PEX14O75381 377 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 WISP2O76076 250 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 CHRM2P08172 466 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 PI3P19957 117 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 HERV-K104P61576 105 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 SLC7A5P1Q8MH63 180 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 METTL8Q9H825 291 aaKnown RBP13.68□□□□□ -0.22
CPSF1-213ENST00000620219 ZNF175Q9Y473 711 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 CD300LBA8K4G0 201 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 UBBP0CG47 229 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 GLI4P10075 376 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 ANXA3P12429 323 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 GABRA1P14867 456 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 RTP5Q14D33 572 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 OR8G1Q15617 311 aa13.68□□□□□ -0.22
CPSF1-213ENST00000620219 GABRG1Q8N1C3 465 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms