RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ZNF860A6NHJ4 632 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 DVL1O14640 695 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 LATO43561 262 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 RPS2P15880 293 aaKnown RBP9.58□□□□□ -0.88
UPF3A-212ENST00000619079 UNQ6494/PRO21346Q6UXR6 183 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 RAB39BQ96DA2 213 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 VSTM2LQ96N03 204 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 ABHD6Q9BV23 337 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 SERGEFQ9UGK8 458 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 OR52A1Q9UKL2 312 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 WASF3Q9UPY6 502 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 OSGIN2Q9Y236 505 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 EMC9Q9Y3B6 208 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 DMDP11532 3685 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 PRSS37A4D1T9 235 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 TMEM14DPA8MWL7 114 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 B4DEV8 164 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 CYB5BO43169 146 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 GALR2O43603 387 aaPredicted RBP9.57□□□□□ -0.88
UPF3A-212ENST00000619079 SRSF10O75494 262 aaKnown RBP9.57□□□□□ -0.88
UPF3A-212ENST00000619079 SNRNP200O75643 2136 aaKnown RBP9.57□□□□□ -0.88
UPF3A-212ENST00000619079 COX5BP10606 129 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 SPTBP11277 2137 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 HIST1H1DP16402 221 aaKnown RBP9.57□□□□□ -0.88
UPF3A-212ENST00000619079 PI3P19957 117 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 AMY2BP19961 511 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 IL2RGP31785 369 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 JOSD1Q15040 202 aaPredicted RBP9.57□□□□□ -0.88
UPF3A-212ENST00000619079 ZNF385CQ66K41 422 aaPredicted RBP9.57□□□□□ -0.88
UPF3A-212ENST00000619079 MAML2Q8IZL2 1156 aaPredicted RBP9.57□□□□□ -0.88
UPF3A-212ENST00000619079 FAM160A2Q8N612 972 aaPredicted RBP9.57□□□□□ -0.88
UPF3A-212ENST00000619079 TMEM52Q8NDY8 209 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 SLC25A43Q8WUT9 341 aaPredicted RBP9.57□□□□□ -0.88
UPF3A-212ENST00000619079 RERGQ96A58 199 aaPredicted RBP9.57□□□□□ -0.88
UPF3A-212ENST00000619079 ANKRD9Q96BM1 317 aaPredicted RBP9.57□□□□□ -0.88
UPF3A-212ENST00000619079 KTI12Q96EK9 354 aaPredicted RBP9.57□□□□□ -0.88
UPF3A-212ENST00000619079 TCEAL2Q9H3H9 227 aaPredicted RBP9.57□□□□□ -0.88
UPF3A-212ENST00000619079 TMEM74BQ9NUR3 256 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 PRR19A6NJB7 356 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 GPR137BO60478 399 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 RAMP1O60894 148 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 CXCL1P09341 107 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 DRD3P35462 400 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 ADPRHP54922 357 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 CASP6P55212 293 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 KIR2DS3Q14952 304 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 GGNBP1Q5YKI7 109 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 ZNF761Q86XN6 746 aaPredicted RBP9.57□□□□□ -0.88
UPF3A-212ENST00000619079 C1orf87Q8N0U7 546 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 ARL6IP6Q8N6S5 226 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 RNASEH2CQ8TDP1 164 aaKnown RBP9.57□□□□□ -0.88
UPF3A-212ENST00000619079 PITPNC1Q9UKF7 332 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 PILRAQ9UKJ1 303 aa9.57□□□□□ -0.88
UPF3A-212ENST00000619079 LSM5Q9Y4Y9 91 aaKnown RBP9.57□□□□□ -0.88
UPF3A-212ENST00000619079 IGLV1-36A0A0B4J1U3 117 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 TMEM269A0A1B0GVZ9 245 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 RBFOX3A6NFN3 312 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 A8MVM7 634 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 C9J4A7 227 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 TNFSF14O43557 240 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 SLC16A7O60669 478 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 TRGC2P03986 189 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 SP9P0CG40 484 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 GLIPR1P48060 266 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 DHPSP49366 369 aaPredicted RBP9.56□□□□□ -0.88
UPF3A-212ENST00000619079 GLO1Q04760 184 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.56□□□□□ -0.88
UPF3A-212ENST00000619079 PDZD11Q5EBL8 140 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 GFI1BQ5VTD9 330 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 AADACL3Q5VUY0 350 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 DEGS2Q6QHC5 323 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 SLC35E3Q7Z769 313 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 SGPP2Q8IWX5 399 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 PLPP5Q8NEB5 264 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 OR14K1Q8NGZ2 314 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 OR13G1Q8NGZ3 307 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 OR4C3Q8NH37 302 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 HPSE2Q8WWQ2 592 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 TVP23CQ96ET8 276 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 HIST1H2BLQ99880 126 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 NIPSNAP3BQ9BS92 247 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 SUCNR1Q9BXA5 334 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 SLC25A31Q9H0C2 315 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 G6PC2Q9NQR9 355 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 MRPL22Q9NWU5 206 aaKnown RBP9.56□□□□□ -0.88
UPF3A-212ENST00000619079 VSX1Q9NZR4 365 aaPredicted RBP9.56□□□□□ -0.88
UPF3A-212ENST00000619079 SRPK3Q9UPE1 567 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 SLCO1B1Q9Y6L6 691 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 A0A087WZY1 265 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 CCDC163A0A0D9SF12 145 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 FOXS1O43638 330 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 TRGC1P0CF51 173 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 SERPINA2P20848 420 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 GNALP38405 381 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 FHITP49789 147 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 NUBP1P53384 320 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 EGR4Q05215 589 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 TCEA2Q15560 299 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 DEFB119Q8N690 84 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 TMEM104Q8NE00 496 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms