RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 CT45A3Q8NHU0 189 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 IP6K3Q96PC2 410 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 KCNK15Q9H427 330 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 POLR2AP24928 1970 aaKnown RBP12.51□□□□□ -0.41
CPSF1-212ENST00000616140 ZNF891A8MT65 544 aaPredicted RBP12.51□□□□□ -0.41
CPSF1-212ENST00000616140 HRKO00198 91 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 CHRNB4P30926 498 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 NPEPL1Q8NDH3 523 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 ADPRHL1Q8NDY3 354 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 OR1J1Q8NGS3 322 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 SARAFQ96BY9 339 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 AKR1E2Q96JD6 320 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 TPPP3Q9BW30 176 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 ANKRD20A5PA0PJZ0 165 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 AQP7O14520 342 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 FPR2P25090 351 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 SCAND1P57086 179 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 RAB1AP62820 205 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 C6orf201Q7Z4U5 140 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 CNTD2Q9H8S5 307 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 ZNF355PQ9NSJ1 428 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 OGG1O15527 345 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 IL2RAP01589 272 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 APOA2P02652 100 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 HOXC4P09017 264 aaPredicted RBP12.51□□□□□ -0.41
CPSF1-212ENST00000616140 SELEP16581 610 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 GPM6AP51674 278 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 SIGIRRQ6IA17 410 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 SPICQ8N5J4 248 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 CLRN3Q8NCR9 226 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 MCHR2Q969V1 340 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 TRIB1Q96RU8 372 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 PSENENQ9NZ42 101 aa12.51□□□□□ -0.41
CPSF1-212ENST00000616140 SSTP61278 116 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 MESP2Q0VG99 397 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 RAB32Q13637 225 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 CMTM2Q8TAZ6 248 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 APOBEC3DQ96AK3 386 aaPredicted RBP12.5□□□□□ -0.41
CPSF1-212ENST00000616140 GABRG3Q99928 467 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 DOCK3Q8IZD9 2030 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 CLEC18AA5D8T8 446 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 PLPP3O14495 311 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 ADAM10O14672 748 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 MPC2O95563 127 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 HPXP02790 462 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 ENDOGQ14249 297 aaKnown RBP12.5□□□□□ -0.41
CPSF1-212ENST00000616140 NAA40Q86UY6 237 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 CLEC18CQ8NCF0 446 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 ZNF485Q8NCK3 441 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 OR11G2Q8NGC1 345 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 ZNF75AQ96N20 296 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 LRRC3BQ96PB8 259 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 FAAP24Q9BTP7 215 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 YBX2Q9Y2T7 364 aaKnown RBP12.5□□□□□ -0.41
CPSF1-212ENST00000616140 MASP2O00187 686 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 DHRS3O75911 302 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 CSF2RBP32927 897 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 PRSS12P56730 875 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 HES1Q14469 280 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 ZNF705AQ6ZN79 300 aaPredicted RBP12.5□□□□□ -0.41
CPSF1-212ENST00000616140 CISD2Q8N5K1 135 aaKnown RBP12.5□□□□□ -0.41
CPSF1-212ENST00000616140 LSMEM1Q8N8F7 131 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 OR10AC1Q8NH08 325 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 SLC39A7Q92504 469 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 EGLN1Q9GZT9 426 aa12.5□□□□□ -0.41
CPSF1-212ENST00000616140 MRPL22Q9NWU5 206 aaKnown RBP12.5□□□□□ -0.41
CPSF1-212ENST00000616140 hCG_1809904A0A1W2PP81 198 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 A0A1W2PPE2 198 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 A0A1W2PR64 198 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 A0A1W2PRV1 198 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 GPR31O00270 319 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 ZNF32P17041 273 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 ASCL1P50553 236 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 FZD5Q13467 585 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 SLC25A30Q5SVS4 291 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 TMEM91Q6ZNR0 172 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 CDC20BQ86Y33 519 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 CADM4Q8NFZ8 388 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 CHST6Q9GZX3 395 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 SLC52A3Q9NQ40 469 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 FRRS1LQ9P0K9 344 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 RCL1Q9Y2P8 373 aaKnown RBP12.49□□□□□ -0.41
CPSF1-212ENST00000616140 RNASEK-C17orf49H0YIS7 233 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 TNFSF15O95150 251 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 KRASP01116 189 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 DEFA4P12838 97 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 SELENOPP49908 381 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 ZNF718Q3SXZ3 478 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 PLPPR2Q96GM1 343 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 TMPRSS13Q9BYE2 586 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 ACTR3CQ9C0K3 210 aaPredicted RBP12.49□□□□□ -0.41
CPSF1-212ENST00000616140 LAMB2P55268 1798 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 C9orf170A2RU37 121 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 SLC22A20A6NK97 555 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 COX5AP20674 150 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 FXNQ16595 210 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 ZNF774Q6NX45 483 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 TMPRSS7Q7RTY8 843 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 PPP1R14DQ9NXH3 145 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 NBASA2RRP1 2371 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms