RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 ERI3O43414 337 aaKnown RBP9.09□□□□□ -0.96
VPS39-214ENST00000614932 KLF8O95600 359 aaPredicted RBP9.09□□□□□ -0.96
VPS39-214ENST00000614932 DANCRP0C864 163 aa9.09□□□□□ -0.96
VPS39-214ENST00000614932 CEACAM1P13688 526 aa9.09□□□□□ -0.96
VPS39-214ENST00000614932 BCL6P41182 706 aa9.09□□□□□ -0.96
VPS39-214ENST00000614932 SIRPAP78324 504 aa9.09□□□□□ -0.96
VPS39-214ENST00000614932 SLC35A1P78382 337 aa9.09□□□□□ -0.96
VPS39-214ENST00000614932 KRTCAP3Q53RY4 240 aa9.09□□□□□ -0.96
VPS39-214ENST00000614932 ZNF542PQ5EBM4 170 aa9.09□□□□□ -0.96
VPS39-214ENST00000614932 ZNF836Q6ZNA1 936 aa9.09□□□□□ -0.96
VPS39-214ENST00000614932 C1orf122Q6ZSJ8 110 aa9.09□□□□□ -0.96
VPS39-214ENST00000614932 ZNF429Q86V71 674 aa9.09□□□□□ -0.96
VPS39-214ENST00000614932 OR2A1Q8NGT9 310 aa9.09□□□□□ -0.96
VPS39-214ENST00000614932 ZNF563Q8TA94 476 aa9.09□□□□□ -0.96
VPS39-214ENST00000614932 ABHD3Q8WU67 409 aa9.09□□□□□ -0.96
VPS39-214ENST00000614932 PDCD1LG2Q9BQ51 273 aa9.09□□□□□ -0.96
VPS39-214ENST00000614932 SNRNP200O75643 2136 aaKnown RBP9.08□□□□□ -0.96
VPS39-214ENST00000614932 H0YL77 283 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 SCDO00767 359 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 CDC40O60508 579 aaKnown RBP eCLIP9.08□□□□□ -0.96
VPS39-214ENST00000614932 SRPX2O60687 465 aaPredicted RBP9.08□□□□□ -0.96
VPS39-214ENST00000614932 CTAG2O75638 210 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 NDUFV2P19404 249 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 CXCR1P25024 350 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 KIR2DL1P43626 348 aaPredicted RBP9.08□□□□□ -0.96
VPS39-214ENST00000614932 RND2P52198 227 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 SLC25A1P53007 311 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 ST3GAL3Q11203 375 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 PDE7AQ13946 482 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 GPR18Q14330 331 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 GAS6Q14393 721 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 AMZ1Q400G9 498 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 FBLN7Q53RD9 439 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 LDLRAD2Q5SZI1 272 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 RPL22L1Q6P5R6 122 aaKnown RBP9.08□□□□□ -0.96
VPS39-214ENST00000614932 FBXW12Q6X9E4 464 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 LRP11Q86VZ4 500 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 STPG4Q8N801 248 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 ZNF738Q8NE65 137 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 SLC26A10Q8NG04 563 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 PELI1Q96FA3 418 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 CIB3Q96Q77 187 aaPredicted RBP9.08□□□□□ -0.96
VPS39-214ENST00000614932 OR11A1Q9GZK7 315 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 CST9LQ9H4G1 147 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 ADAP2Q9NPF8 381 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 MRPS2Q9Y399 296 aaKnown RBP9.08□□□□□ -0.96
VPS39-214ENST00000614932 NUP210Q8TEM1 1887 aaPredicted RBP9.08□□□□□ -0.96
VPS39-214ENST00000614932 ZNF860A6NHJ4 632 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 C17orf105B2RV13 164 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 B4DEV8 164 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 GPRIN2O60269 458 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 FUT3P21217 361 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 FPR2P25090 351 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 SCAND1P57086 179 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 DUSP2Q05923 314 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 ARL6IP1Q15041 203 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 ELOCQ15369 112 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 ZNF468Q5VIY5 522 aaPredicted RBP9.08□□□□□ -0.96
VPS39-214ENST00000614932 ZNF776Q68DI1 518 aaPredicted RBP9.08□□□□□ -0.96
VPS39-214ENST00000614932 TMEFF1Q8IYR6 380 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 BHLHE23Q8NDY6 225 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 UBE2E3Q969T4 207 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 MCHR2Q969V1 340 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 HCAR1Q9BXC0 346 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 CLDND1Q9NY35 253 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 AHSPQ9NZD4 102 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 TBC1D29Q9UFV1 150 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 WDR45Q9Y484 360 aa9.08□□□□□ -0.96
VPS39-214ENST00000614932 KNG1P01042 644 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 TMEM33P57088 247 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 RPS21P63220 83 aaKnown RBP9.07□□□□□ -0.96
VPS39-214ENST00000614932 OPN5Q6U736 354 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 ZNF761Q86XN6 746 aaPredicted RBP9.07□□□□□ -0.96
VPS39-214ENST00000614932 OR51A2Q8NGJ7 313 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 PATE1Q8WXA2 126 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 MS4A6EQ96DS6 147 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 RARRES2Q99969 163 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 NIPSNAP3BQ9BS92 247 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 APOOQ9BUR5 198 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 RBKSQ9H477 322 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 SRD5A3Q9H8P0 318 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 CDV3Q9UKY7 258 aaKnown RBP9.07□□□□□ -0.96
VPS39-214ENST00000614932 COX11Q9Y6N1 276 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 MUC22E2RYF6 1773 aaPredicted RBP9.07□□□□□ -0.96
VPS39-214ENST00000614932 COL4A3Q01955 1670 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 SERTM2A0A1B0GWG4 89 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 ZNF320A2RRD8 509 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 CLDN34H7C241 214 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 CTSVO60911 334 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 NTN1O95631 604 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 PET100P0DJ07 73 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 KLK2P20151 261 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 MAKP20794 623 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 MDKP21741 143 aaPredicted RBP9.07□□□□□ -0.96
VPS39-214ENST00000614932 GPR4P46093 362 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 RAB28P51157 221 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 NCBP2P52298 156 aaKnown RBP eCLIP9.07□□□□□ -0.96
VPS39-214ENST00000614932 TAS2R41P59536 307 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 PRDX1Q06830 199 aaKnown RBP9.07□□□□□ -0.96
VPS39-214ENST00000614932 CEBPEQ15744 281 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms