RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 HDHD3Q9BSH5 251 aaPredicted RBP13.5□□□□□ -0.25
UPF1-204ENST00000596842 TOLLIPQ9H0E2 274 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 RHOFQ9HBH0 211 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 GPR37O15354 613 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 BPNT1O95861 308 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 CX3CR1P49238 355 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 IAH1Q2TAA2 248 aaPredicted RBP13.49□□□□□ -0.25
UPF1-204ENST00000596842 PABPC1L2AQ5JQF8 200 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 PNLDC1Q8NA58 520 aaKnown RBP13.49□□□□□ -0.25
UPF1-204ENST00000596842 FLVCR1Q9Y5Y0 555 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 C2CD4DB7Z1M9 353 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 ZNF43P17038 809 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 LAP3P28838 519 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 MMP16P51512 607 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 GABREP78334 506 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 AKR1C8PQ5T2L2 129 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 OR2A2Q6IF42 318 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 OR4A4PQ8NGN8 299 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 NCOA6Q14686 2063 aaPredicted RBP13.49□□□□□ -0.25
UPF1-204ENST00000596842 AHCTF1Q8WYP5 2266 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 CDC14BO60729 498 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 QDPRP09417 244 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 HIST1H1DP16402 221 aaKnown RBP13.49□□□□□ -0.25
UPF1-204ENST00000596842 FAHP16930 419 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 OPRM1P35372 400 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 C17orf67Q0P5P2 114 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 PDCD1Q15116 288 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 C20orf196Q8IYI0 205 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 UQCC1Q9NVA1 299 aa13.49□□□□□ -0.25
UPF1-204ENST00000596842 A0A0A6YYH2 397 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 A6NJ64 397 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 FTCDNL1E5RQL4 147 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 PRH1P02810 166 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 MUC1P15941 1255 aaPredicted RBP13.48□□□□□ -0.25
UPF1-204ENST00000596842 ADH6P28332 368 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 RBMXP38159 391 aaKnown RBP13.48□□□□□ -0.25
UPF1-204ENST00000596842 TMEM50BP56557 158 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 C4orf17Q53FE4 359 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 ACTBL2Q562R1 376 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 FAM24BQ8N5W8 94 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 OR10G3Q8NGC4 313 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 URM1Q9BTM9 101 aaKnown RBP13.48□□□□□ -0.25
UPF1-204ENST00000596842 TAF9BQ9HBM6 251 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 A0A087X0M5 115 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 IGKV3D-11A0A0A0MRZ8 115 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 A0A1B0GX30 115 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 TERTO14746 1132 aaKnown RBP13.48□□□□□ -0.25
UPF1-204ENST00000596842 FCGR2AP12318 317 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 C6orf201Q7Z4U5 140 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 TGIF2LXQ8IUE1 241 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 UBAC2Q8NBM4 344 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 KCNG3Q8TAE7 436 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 PHYHIPLQ96FC7 376 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 ANGPTL7O43827 346 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 ARG1P05089 322 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 ASCL1P50553 236 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 CYCSP99999 105 aaKnown RBP13.48□□□□□ -0.25
UPF1-204ENST00000596842 RNF151Q2KHN1 245 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 PEG10Q86TG7 708 aaKnown RBP13.48□□□□□ -0.25
UPF1-204ENST00000596842 AKR1E2Q96JD6 320 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 TWSG1Q9GZX9 223 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 LMAN1LQ9HAT1 526 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 LHFPL6Q9Y693 200 aa13.48□□□□□ -0.25
UPF1-204ENST00000596842 A0A1B0GX78 115 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 A6NLC8 198 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 SRSF10O75494 262 aaKnown RBP13.47□□□□□ -0.25
UPF1-204ENST00000596842 DTD1Q8TEA8 209 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 TMEM230Q96A57 120 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 RBM24Q9BX46 236 aaKnown RBP13.47□□□□□ -0.25
UPF1-204ENST00000596842 OR10A2Q9H208 303 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 CCDC163A0A0D9SF12 145 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 ZNF814B7Z6K7 855 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 IGHG1P01857 330 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 ISG15P05161 165 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 CLDN17P56750 224 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 TAS2R31P59538 309 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 HNRNPKP61978 463 aaKnown RBP eCLIP13.47□□□□□ -0.25
UPF1-204ENST00000596842 HOGA1Q86XE5 327 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 SULT4A1Q9BR01 284 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 SLC2A4RGQ9NR83 387 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 C14orf166Q9Y224 244 aaKnown RBP13.47□□□□□ -0.25
UPF1-204ENST00000596842 SHANK1Q9Y566 2161 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 XRCC2O43543 280 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 NME2P1O60361 137 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 OR2J2O76002 312 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 DIRAS3O95661 229 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 MELTFP08582 738 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 HOXB1P14653 301 aaPredicted RBP13.47□□□□□ -0.25
UPF1-204ENST00000596842 CCR5P51681 352 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 RRADP55042 308 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 TSPO2Q5TGU0 170 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 OR13G1Q8NGZ3 307 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 C8orf33Q9H7E9 229 aaPredicted RBP13.47□□□□□ -0.25
UPF1-204ENST00000596842 ZNF160Q9HCG1 818 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 B3GALT1Q9Y5Z6 326 aa13.47□□□□□ -0.25
UPF1-204ENST00000596842 DUX1O43812 170 aa13.46□□□□□ -0.25
UPF1-204ENST00000596842 IL2RAP01589 272 aa13.46□□□□□ -0.25
UPF1-204ENST00000596842 SFTA3P0C7M3 94 aa13.46□□□□□ -0.25
UPF1-204ENST00000596842 TMEM225BP0DP42 221 aa13.46□□□□□ -0.25
UPF1-204ENST00000596842 CFHR1Q03591 330 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms