RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 TMEM210A6NLX4 147 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 GPR37O15354 613 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 NDUFB3O43676 98 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 NDUFA7O95182 113 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 KNG1P01042 644 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 TGM4P49221 684 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 GPM6AP51674 278 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 RPL15P61313 204 aaKnown RBP16.86■□□□□ 0.29
SHMT1-209ENST00000582653 RELBQ01201 579 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 PRB3Q04118 309 aaPredicted RBP16.86■□□□□ 0.29
SHMT1-209ENST00000582653 CDONQ4KMG0 1287 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 FAM76BQ5HYJ3 339 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 CEP78Q5JTW2 689 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 STUMQ69YW2 141 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 VMO1Q7Z5L0 202 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 OR10Z1Q8NGY1 313 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 OR5K1Q8NHB7 308 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 FAM81AQ8TBF8 368 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 DNAJC9Q8WXX5 260 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 DYRK2Q92630 601 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 C12orf43Q96C57 262 aaKnown RBP16.86■□□□□ 0.29
SHMT1-209ENST00000582653 RAB3IPQ96QF0 476 aaPredicted RBP16.86■□□□□ 0.29
SHMT1-209ENST00000582653 HIST1H2AAQ96QV6 131 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 MROQ9BYG7 248 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 PBOV1Q9GZY1 135 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 ONECUT1Q9UBC0 465 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 DNAJB11Q9UBS4 358 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 ZNF391Q9UJN7 358 aa16.86■□□□□ 0.29
SHMT1-209ENST00000582653 A0A0U1RQK1 487 aa16.85■□□□□ 0.29
SHMT1-209ENST00000582653 MAGEB4O15481 346 aaPredicted RBP16.85■□□□□ 0.29
SHMT1-209ENST00000582653 RHBDL1O75783 438 aa16.85■□□□□ 0.29
SHMT1-209ENST00000582653 EPHA2P29317 976 aa16.85■□□□□ 0.29
SHMT1-209ENST00000582653 DCTDP32321 178 aa16.85■□□□□ 0.29
SHMT1-209ENST00000582653 MAP2K3P46734 347 aa16.85■□□□□ 0.29
SHMT1-209ENST00000582653 RAG2P55895 527 aa16.85■□□□□ 0.29
SHMT1-209ENST00000582653 BNIP1Q12981 228 aa16.85■□□□□ 0.29
SHMT1-209ENST00000582653 ATPAF1Q5TC12 328 aaPredicted RBP16.85■□□□□ 0.29
SHMT1-209ENST00000582653 OLFML2AQ68BL7 652 aa16.85■□□□□ 0.29
SHMT1-209ENST00000582653 DEGS2Q6QHC5 323 aa16.85■□□□□ 0.29
SHMT1-209ENST00000582653 OR51E1Q8TCB6 317 aa16.85■□□□□ 0.29
SHMT1-209ENST00000582653 OR8B4Q96RC9 309 aa16.85■□□□□ 0.29
SHMT1-209ENST00000582653 ABCB9Q9NP78 766 aa16.85■□□□□ 0.29
SHMT1-209ENST00000582653 A0A0U1RQV5 110 aa16.84■□□□□ 0.29
SHMT1-209ENST00000582653 ZNF816-ZNF321PA0A0X1KG74 233 aa16.84■□□□□ 0.29
SHMT1-209ENST00000582653 A0A1B0GVI7 797 aa16.84■□□□□ 0.29
SHMT1-209ENST00000582653 CLPSL1A2RUU4 121 aa16.84■□□□□ 0.29
SHMT1-209ENST00000582653 ZNF732B4DXR9 585 aa16.84■□□□□ 0.29
SHMT1-209ENST00000582653 IER3P46695 156 aa16.84■□□□□ 0.29
SHMT1-209ENST00000582653 DLX1P56177 255 aa16.84■□□□□ 0.29
SHMT1-209ENST00000582653 ROM1Q03395 351 aa16.84■□□□□ 0.29
SHMT1-209ENST00000582653 MFGE8Q08431 387 aaPredicted RBP16.84■□□□□ 0.29
SHMT1-209ENST00000582653 OCLNQ16625 522 aa16.84■□□□□ 0.29
SHMT1-209ENST00000582653 LCN1P1Q5VSP4 162 aa16.84■□□□□ 0.29
SHMT1-209ENST00000582653 C17orf107Q6ZR85 190 aa16.84■□□□□ 0.29
SHMT1-209ENST00000582653 COMMD2Q86X83 199 aa16.84■□□□□ 0.29
SHMT1-209ENST00000582653 ZNF679Q8IYX0 411 aa16.84■□□□□ 0.29
SHMT1-209ENST00000582653 TCEANCQ8N8B7 351 aa16.84■□□□□ 0.29
SHMT1-209ENST00000582653 H1FXQ92522 213 aaKnown RBP16.84■□□□□ 0.29
SHMT1-209ENST00000582653 GAFA1Q96PS6 74 aa16.84■□□□□ 0.29
SHMT1-209ENST00000582653 GPR84Q9NQS5 396 aa16.84■□□□□ 0.29
SHMT1-209ENST00000582653 KRT84Q9NSB2 600 aa16.84■□□□□ 0.29
SHMT1-209ENST00000582653 IKZF2Q9UKS7 526 aa16.84■□□□□ 0.29
SHMT1-209ENST00000582653 ACOD1A6NK06 481 aa16.83■□□□□ 0.28
SHMT1-209ENST00000582653 G3V2T6 193 aa16.83■□□□□ 0.28
SHMT1-209ENST00000582653 ESRRGP62508 458 aa16.83■□□□□ 0.28
SHMT1-209ENST00000582653 EFNB1P98172 346 aa16.83■□□□□ 0.28
SHMT1-209ENST00000582653 ATP6AP1Q15904 470 aa16.83■□□□□ 0.28
SHMT1-209ENST00000582653 DGUOKQ16854 277 aa16.83■□□□□ 0.28
SHMT1-209ENST00000582653 LRRC10Q5BKY1 277 aa16.83■□□□□ 0.28
SHMT1-209ENST00000582653 METAP1DQ6UB28 335 aaPredicted RBP16.83■□□□□ 0.28
SHMT1-209ENST00000582653 ZNF788Q6ZQV5 615 aa16.83■□□□□ 0.28
SHMT1-209ENST00000582653 MOB3CQ70IA8 216 aa16.83■□□□□ 0.28
SHMT1-209ENST00000582653 MEPCEQ7L2J0 689 aaKnown RBP16.83■□□□□ 0.28
SHMT1-209ENST00000582653 LDLRAD3Q86YD5 345 aa16.83■□□□□ 0.28
SHMT1-209ENST00000582653 PIP4P2Q8N4L2 257 aa16.83■□□□□ 0.28
SHMT1-209ENST00000582653 ANGPTL6Q8NI99 470 aa16.83■□□□□ 0.28
SHMT1-209ENST00000582653 NPRL2Q8WTW4 380 aa16.83■□□□□ 0.28
SHMT1-209ENST00000582653 WFDC12Q8WWY7 111 aa16.83■□□□□ 0.28
SHMT1-209ENST00000582653 CNN2Q99439 309 aaKnown RBP16.83■□□□□ 0.28
SHMT1-209ENST00000582653 APOL4Q9BPW4 351 aa16.83■□□□□ 0.28
SHMT1-209ENST00000582653 DCTN5Q9BTE1 182 aa16.83■□□□□ 0.28
SHMT1-209ENST00000582653 OR51I2Q9H344 312 aa16.83■□□□□ 0.28
SHMT1-209ENST00000582653 SIRT7Q9NRC8 400 aa16.83■□□□□ 0.28
SHMT1-209ENST00000582653 CMYA5Q8N3K9 4069 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 ZNF254O75437 659 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 IGLV3-1P01715 115 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 FAHP16930 419 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 GLRA1P23415 457 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 RIDAP52758 137 aaKnown RBP16.82■□□□□ 0.28
SHMT1-209ENST00000582653 CXCR4P61073 352 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 SRSF4Q08170 494 aaKnown RBP16.82■□□□□ 0.28
SHMT1-209ENST00000582653 CEACAM21Q3KPI0 293 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 AADACL4Q5VUY2 407 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 SLX4IPQ5VYV7 408 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 KRT74Q7RTS7 529 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 THAP5Q7Z6K1 395 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 AMIGO2Q86SJ2 522 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 ASB17Q8WXJ9 295 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 IL4I1Q96RQ9 567 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 CITED1Q99966 193 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms