RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 A6NIZ1 184 aa8.51□□□□□ -1.05
CCDC40-212ENST00000574799 M0R143 59 aa8.51□□□□□ -1.05
CCDC40-212ENST00000574799 SCDO00767 359 aa8.51□□□□□ -1.05
CCDC40-212ENST00000574799 TGOLN2O43493 480 aa8.51□□□□□ -1.05
CCDC40-212ENST00000574799 RAB4AP20338 218 aa8.51□□□□□ -1.05
CCDC40-212ENST00000574799 IL2RGP31785 369 aa8.51□□□□□ -1.05
CCDC40-212ENST00000574799 RAP1BP61224 184 aa8.51□□□□□ -1.05
CCDC40-212ENST00000574799 MFGE8Q08431 387 aaPredicted RBP8.51□□□□□ -1.05
CCDC40-212ENST00000574799 SLC22A24Q8N4F4 322 aa8.51□□□□□ -1.05
CCDC40-212ENST00000574799 ZNF283Q8N7M2 679 aa8.51□□□□□ -1.05
CCDC40-212ENST00000574799 SPACA7Q96KW9 195 aa8.51□□□□□ -1.05
CCDC40-212ENST00000574799 TMEM59Q9BXS4 323 aa8.51□□□□□ -1.05
CCDC40-212ENST00000574799 METTL9Q9H1A3 318 aa8.51□□□□□ -1.05
CCDC40-212ENST00000574799 KIR3DX1Q9H7L2 352 aa8.51□□□□□ -1.05
CCDC40-212ENST00000574799 UCK1Q9HA47 277 aa8.51□□□□□ -1.05
CCDC40-212ENST00000574799 STARD5Q9NSY2 213 aa8.51□□□□□ -1.05
CCDC40-212ENST00000574799 AK3Q9UIJ7 227 aa8.51□□□□□ -1.05
CCDC40-212ENST00000574799 LIPGQ9Y5X9 500 aa8.51□□□□□ -1.05
CCDC40-212ENST00000574799 WSB1Q9Y6I7 421 aa8.51□□□□□ -1.05
CCDC40-212ENST00000574799 SLC31A1O15431 190 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 PNPP00491 289 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 PGA4P0DJD7 388 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 PGA5P0DJD9 388 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 HOXB2P14652 356 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 ZNF93P35789 620 aaPredicted RBP8.5□□□□□ -1.05
CCDC40-212ENST00000574799 SLC25A1P53007 311 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 SNU13P55769 128 aaKnown RBP8.5□□□□□ -1.05
CCDC40-212ENST00000574799 PPP1CAP62136 330 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 PLAURQ03405 335 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 SRSF4Q08170 494 aaKnown RBP8.5□□□□□ -1.05
CCDC40-212ENST00000574799 SP6Q3SY56 376 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 GLIPR1L1Q6UWM5 242 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 CPEB2Q7Z5Q1 589 aaKnown RBP8.5□□□□□ -1.05
CCDC40-212ENST00000574799 OOSP2Q86WS3 158 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 NKAIN3Q8N8D7 197 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 NECAP1Q8NC96 275 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 OR51T1Q8NGJ9 327 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 FAM174AQ8TBP5 190 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 Q8WTZ3 238 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 TSACCQ96A04 125 aaPredicted RBP8.5□□□□□ -1.05
CCDC40-212ENST00000574799 C2orf88Q9BSF0 95 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 GPR87Q9BY21 358 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 FBRSQ9HAH7 460 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 STRAPQ9Y3F4 350 aaKnown RBP8.5□□□□□ -1.05
CCDC40-212ENST00000574799 SERINC4A6NH21 518 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 HCRTR2O43614 444 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 TBPP20226 339 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 PMELP40967 661 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 ACAA2P42765 397 aaKnown RBP8.5□□□□□ -1.05
CCDC40-212ENST00000574799 MEX3BQ6ZN04 569 aaKnown RBP8.5□□□□□ -1.05
CCDC40-212ENST00000574799 Q6ZS52 159 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 FAM185AQ8N0U4 392 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 PAQR4Q8N4S7 273 aaPredicted RBP8.5□□□□□ -1.05
CCDC40-212ENST00000574799 DTWD2Q8NBA8 298 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 M1APQ8TC57 530 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 C5orf66Q9H5L9 145 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 PLEKHA2Q9HB19 425 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 CBLN4Q9NTU7 201 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 HSF4Q9ULV5 492 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 SLC7A11Q9UPY5 501 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 TP53TG5Q9Y2B4 290 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 MRPS2Q9Y399 296 aaKnown RBP8.5□□□□□ -1.05
CCDC40-212ENST00000574799 FAM221BA6H8Z2 402 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 RBFOX3A6NFN3 312 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 LYPD3O95274 346 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 COX5BP10606 129 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 PNMTP11086 282 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 CD81P60033 236 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 NUTF2P61970 127 aaKnown RBP8.5□□□□□ -1.05
CCDC40-212ENST00000574799 HGFACQ04756 655 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 GLO1Q04760 184 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 SUMF1Q8NBK3 374 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 OR52N4Q8NGI2 321 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 OR2I1PQ8NGU4 316 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 FAM71F1Q96KD3 344 aaPredicted RBP8.5□□□□□ -1.05
CCDC40-212ENST00000574799 ABHD6Q9BV23 337 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 MRPL37Q9BZE1 423 aaKnown RBP8.5□□□□□ -1.05
CCDC40-212ENST00000574799 ZNF107Q9UII5 783 aaPredicted RBP8.5□□□□□ -1.05
CCDC40-212ENST00000574799 HIF3AQ9Y2N7 669 aa8.5□□□□□ -1.05
CCDC40-212ENST00000574799 COL5A1P20908 1838 aaPredicted RBP8.49□□□□□ -1.05
CCDC40-212ENST00000574799 ZFP92A6NM28 416 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 ZNF850A8MQ14 1090 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 CT62P0C5K7 136 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 SLC6A9P48067 706 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 H3F3AP84243 136 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 FAM3AP98173 230 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 FAM53BQ14153 422 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 TOMM20Q15388 145 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 ZNF260Q3ZCT1 412 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 PHF19Q5T6S3 580 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 PRSS41Q7RTY9 318 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 HIST3H2BBQ8N257 126 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 TMEM217Q8N7C4 229 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 OR5D14Q8NGL3 314 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 OR4C3Q8NH37 302 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 TAAR8Q969N4 342 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 RAB24Q969Q5 203 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 GALNT14Q96FL9 552 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 C5orf34Q96MH7 638 aa8.49□□□□□ -1.05
CCDC40-212ENST00000574799 SH3BGRL3Q9H299 93 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms