RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CEACAM21Q3KPI0 293 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 ZNF684Q5T5D7 378 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 LCN1P1Q5VSP4 162 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 TMEM42Q69YG0 159 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 Q6YL49 198 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 ZNF788Q6ZQV5 615 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 ZDHHC23Q8IYP9 409 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 PNLDC1Q8NA58 520 aaKnown RBP12.26□□□□□ -0.45
CLN3-213ENST00000565047 OR5T2Q8NGG2 359 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 C8orf46Q8TAG6 207 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 OR51E1Q8TCB6 317 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 RNF170Q96K19 258 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 CNN2Q99439 309 aaKnown RBP12.26□□□□□ -0.45
CLN3-213ENST00000565047 CIB1Q99828 191 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 ZNF747Q9BV97 191 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 DNTTIP1Q9H147 329 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 GPR84Q9NQS5 396 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 MRM2Q9UI43 246 aaKnown RBP12.26□□□□□ -0.45
CLN3-213ENST00000565047 SLC22A31A6NKX4 558 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 HOXA3O43365 443 aaPredicted RBP12.25□□□□□ -0.45
CLN3-213ENST00000565047 AKR7A2O43488 359 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 TFF1P04155 84 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 MAP2K3P46734 347 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 GPM6AP51674 278 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 CXCR4P61073 352 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 EGR3Q06889 387 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 FOXL1Q12952 345 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 CDONQ4KMG0 1287 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 ZBTB37Q5TC79 503 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 GPR157Q5UAW9 335 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 C16orf87Q6PH81 154 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 ZNF322Q6U7Q0 402 aaPredicted RBP12.25□□□□□ -0.45
CLN3-213ENST00000565047 SSX6Q7RTT6 188 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 Q8N7P7 452 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 C3orf56Q8N813 242 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 OR5A2Q8NGI9 324 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 SLC25A28Q96A46 364 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 GAFA1Q96PS6 74 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 IL4I1Q96RQ9 567 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 MNTQ99583 582 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 APOL4Q9BPW4 351 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 DCTN5Q9BTE1 182 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 GABARAPL3Q9BY60 117 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 TTTY10Q9BZA0 68 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 NOX4Q9NPH5 578 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 CLN6Q9NWW5 311 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 ZNF222Q9UK12 451 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 KPTNQ9Y664 436 aa12.25□□□□□ -0.45
CLN3-213ENST00000565047 IGKV1D-17A0A075B6S4 117 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 IGHV1-69DA0A0B4J2H0 117 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 ZNF732B4DXR9 585 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 GPR37O15354 613 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 IGHV1-69P01742 117 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 RIDAP52758 137 aaKnown RBP12.24□□□□□ -0.45
CLN3-213ENST00000565047 GNG3P63215 75 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 PDCD1Q15116 288 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 DGUOKQ16854 277 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 DMRTC1Q5HYR2 192 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 CEP78Q5JTW2 689 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 C1orf146Q5VVC0 180 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 SLC36A1Q7Z2H8 476 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 SLC35F2Q8IXU6 374 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 ELMOD2Q8IZ81 293 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 PIP4P2Q8N4L2 257 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 OR14K1Q8NGZ2 314 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 ST8SIA4Q92187 359 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 AQP3Q92482 292 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 RNF166Q96A37 237 aaPredicted RBP12.24□□□□□ -0.45
CLN3-213ENST00000565047 CENPNQ96H22 339 aaPredicted RBP12.24□□□□□ -0.45
CLN3-213ENST00000565047 OSBPL10Q9BXB5 764 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 PRRG3Q9BZD7 231 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 SNTG1Q9NSN8 517 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 OAZ3Q9UMX2 235 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 R4GMQ9 66 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 V9GYS6 101 aa12.24□□□□□ -0.45
CLN3-213ENST00000565047 SIGLEC5O15389 551 aa12.23□□□□□ -0.45
CLN3-213ENST00000565047 DHRS3O75911 302 aa12.23□□□□□ -0.45
CLN3-213ENST00000565047 MELTFP08582 738 aa12.23□□□□□ -0.45
CLN3-213ENST00000565047 ACAA1P09110 424 aaPredicted RBP12.23□□□□□ -0.45
CLN3-213ENST00000565047 PSG2P11465 335 aa12.23□□□□□ -0.45
CLN3-213ENST00000565047 FCGR1AP12314 374 aa12.23□□□□□ -0.45
CLN3-213ENST00000565047 FAHP16930 419 aa12.23□□□□□ -0.45
CLN3-213ENST00000565047 RIPPLY1Q0D2K3 151 aa12.23□□□□□ -0.45
CLN3-213ENST00000565047 ZNF829Q3KNS6 432 aaPredicted RBP12.23□□□□□ -0.45
CLN3-213ENST00000565047 METTL11BQ5VVY1 283 aa12.23□□□□□ -0.45
CLN3-213ENST00000565047 METAP1DQ6UB28 335 aaPredicted RBP12.23□□□□□ -0.45
CLN3-213ENST00000565047 PLEKHG7Q6ZR37 379 aa12.23□□□□□ -0.45
CLN3-213ENST00000565047 TNFRSF14Q92956 283 aa12.23□□□□□ -0.45
CLN3-213ENST00000565047 FAM71F1Q96KD3 344 aaPredicted RBP12.23□□□□□ -0.45
CLN3-213ENST00000565047 SEMA6AQ9H2E6 1030 aa12.23□□□□□ -0.45
CLN3-213ENST00000565047 ACOXLQ9NUZ1 547 aa12.23□□□□□ -0.45
CLN3-213ENST00000565047 NLKQ9UBE8 527 aa12.23□□□□□ -0.45
CLN3-213ENST00000565047 WARS2Q9UGM6 360 aaKnown RBP12.23□□□□□ -0.45
CLN3-213ENST00000565047 PIGLQ9Y2B2 252 aa12.23□□□□□ -0.45
CLN3-213ENST00000565047 MAB21L2Q9Y586 359 aa12.23□□□□□ -0.45
CLN3-213ENST00000565047 PCDHGB1Q9Y5G3 927 aa12.23□□□□□ -0.45
CLN3-213ENST00000565047 A0A1W2PQL4 384 aaPredicted RBP12.22□□□□□ -0.45
CLN3-213ENST00000565047 OR5B21A6NL26 309 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 OR2AT4A6NND4 320 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 H3BNX3 289 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms