RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 SLC25A47Q6Q0C1 308 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 MISPQ8IVT2 679 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 OR14K1Q8NGZ2 314 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 MRGPRX4Q96LA9 322 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 MLXQ9UH92 298 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 SRPK3Q9UPE1 567 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 TEX13DA0A0J9YY54 714 aaPredicted RBP13.19□□□□□ -0.3
USP28-214ENST00000545540 MFNGO00587 321 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 TNFSF11O14788 317 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 PTGER4P35408 488 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 FHITP49789 147 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 RIPPLY1Q0D2K3 151 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 PHLDA2Q53GA4 152 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 ZNF468Q5VIY5 522 aaPredicted RBP13.19□□□□□ -0.3
USP28-214ENST00000545540 DTWD2Q8NBA8 298 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 CCDC74BQ96LY2 380 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 MYOZ1Q9NP98 299 aaPredicted RBP13.19□□□□□ -0.3
USP28-214ENST00000545540 NXT1Q9UKK6 140 aaKnown RBP13.19□□□□□ -0.3
USP28-214ENST00000545540 ADAMTS9Q9P2N4 1935 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 LAMA5O15230 3695 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 IGHV5-10-1A0A0J9YXX1 117 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 MED6O75586 246 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 LPAR6P43657 344 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 C9orf135Q5VTT2 229 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 SEMA6DQ8NFY4 1073 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 C20orf24Q9BUV8 137 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 PIGMQ9H3S5 423 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 ZNF629Q9UEG4 869 aaPredicted RBP13.18□□□□□ -0.3
USP28-214ENST00000545540 A0A1B0GW55 424 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 DUX4L2P0CJ85 424 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 DUX4L3P0CJ86 424 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 DUX4L4P0CJ87 422 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 DUX4L5P0CJ88 424 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 DUX4L6P0CJ89 424 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 DUX4L7P0CJ90 424 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 MUC1P15941 1255 aaPredicted RBP13.18□□□□□ -0.3
USP28-214ENST00000545540 ACKR3P25106 362 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 CSNK1A1P48729 337 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 OR56B1Q8NGI3 324 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 AKR7LQ8NHP1 331 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 SPACA9Q96E40 222 aaPredicted RBP13.18□□□□□ -0.3
USP28-214ENST00000545540 CMSS1Q9BQ75 279 aaKnown RBP13.18□□□□□ -0.3
USP28-214ENST00000545540 URM1Q9BTM9 101 aaKnown RBP13.18□□□□□ -0.3
USP28-214ENST00000545540 PECRQ9BY49 303 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 DNTTIP1Q9H147 329 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 PLA2G2EQ9NZK7 142 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 DUX4Q9UBX2 424 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 GLS2Q9UI32 602 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 B3GALT1Q9Y5Z6 326 aa13.18□□□□□ -0.3
USP28-214ENST00000545540 PMS2P1A4D2B8 440 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 C1QL1O75973 258 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 CHRM2P08172 466 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 CCL4P13236 92 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 CD80P33681 288 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 MTCP1P56278 107 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 ZNF529Q6P280 563 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 YRDCQ86U90 279 aaKnown RBP13.17□□□□□ -0.3
USP28-214ENST00000545540 MRPL24Q96A35 216 aaKnown RBP13.17□□□□□ -0.3
USP28-214ENST00000545540 FBXO17Q96EF6 278 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 OXGR1Q96P68 337 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 ALKBH3Q96Q83 286 aaPredicted RBP13.17□□□□□ -0.3
USP28-214ENST00000545540 NXPH3O95157 252 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 FAM157CP0CG43 387 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 NTF4P34130 210 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 SPEM2Q0P670 501 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 C5orf46Q6UWT4 87 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 CHRNA10Q9GZZ6 450 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 ESPL1Q14674 2120 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 MSTNO14793 375 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 PVALBP20472 110 aaPredicted RBP13.17□□□□□ -0.3
USP28-214ENST00000545540 OR5L2Q8NGL0 311 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 OIT3Q8WWZ8 545 aa13.17□□□□□ -0.3
USP28-214ENST00000545540 DAOP14920 347 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 MST1LQ2TV78 715 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 PIGYQ3MUY2 71 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 CADM4Q8NFZ8 388 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 PIGQQ9BRB3 760 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 PHF7Q9BWX1 381 aaPredicted RBP13.16□□□□□ -0.3
USP28-214ENST00000545540 ZNF850A8MQ14 1090 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 NPIPA2E9PIF3 369 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 NPIPA3F8WFD2 350 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 H7C2Y5 167 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 RFC3P40938 356 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 KCNJ3P48549 501 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 RPS18P62269 152 aaKnown RBP13.16□□□□□ -0.3
USP28-214ENST00000545540 HGFACQ04756 655 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 SRSF4Q08170 494 aaKnown RBP13.16□□□□□ -0.3
USP28-214ENST00000545540 ZNF774Q6NX45 483 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 WDR74Q6RFH5 385 aaPredicted RBP13.16□□□□□ -0.3
USP28-214ENST00000545540 DOK3Q7L591 496 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 PPP1R3BQ86XI6 285 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 ESX1Q8N693 406 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 OR6X1Q8NH79 312 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 RNF141Q8WVD5 230 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 CNTNAP3BQ96NU0 1288 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 SLC26A1Q9H2B4 701 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 PTRH2Q9Y3E5 179 aaKnown RBP13.16□□□□□ -0.3
USP28-214ENST00000545540 CHCHD2Q9Y6H1 151 aaPredicted RBP13.16□□□□□ -0.3
USP28-214ENST00000545540 A0A0G2JMM0 328 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 A0A1W2PPB8 328 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms