RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 DPPA2Q7Z7J5 298 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 PEG10Q86TG7 708 aaKnown RBP8.64□□□□□ -1.03
SS18-205ENST00000542420 SEMA6DQ8NFY4 1073 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 OR4K15Q8NH41 348 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 CHIAQ9BZP6 476 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 ESRP2Q9H6T0 727 aaKnown RBP8.64□□□□□ -1.03
SS18-205ENST00000542420 PARPBPQ9NWS1 579 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 GLS2Q9UI32 602 aa8.64□□□□□ -1.03
SS18-205ENST00000542420 A0A1B0GW55 424 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 A8MXK9 166 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 DNASE2O00115 360 aaPredicted RBP8.63□□□□□ -1.03
SS18-205ENST00000542420 XRCC2O43543 280 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 OR2F2O95006 317 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 DUX4L2P0CJ85 424 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 DUX4L3P0CJ86 424 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 DUX4L4P0CJ87 422 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 DUX4L5P0CJ88 424 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 DUX4L6P0CJ89 424 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 DUX4L7P0CJ90 424 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 NUP62P37198 522 aaPredicted RBP8.63□□□□□ -1.03
SS18-205ENST00000542420 OR2F1Q13607 317 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 LY6G6FQ5SQ64 297 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 C11orf88Q6PI97 169 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 CRIP3Q6Q6R5 217 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 TMUB2Q71RG4 321 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 CCDC36Q8IYA8 594 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 CLRN3Q8NCR9 226 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 OR10D3Q8NH80 312 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 TERB2Q8NHR7 220 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 ADAMTS17Q8TE56 1095 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 SCARB1Q8WTV0 552 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 RELTQ969Z4 430 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 FBXO17Q96EF6 278 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 S100A13Q99584 98 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 GAL3ST1Q99999 423 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 ARRDC1-AS1Q9H2J1 176 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 RDH8Q9NYR8 311 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 DUX4Q9UBX2 424 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 VSIG4Q9Y279 399 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 KCNK7Q9Y2U2 307 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 C9orf170A2RU37 121 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 OR5H15A6NDH6 313 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 DBX1A6NMT0 343 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 ZNF724A8MTY0 619 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 C9orf172C9J069 976 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 FARS2O95363 451 aaKnown RBP8.63□□□□□ -1.03
SS18-205ENST00000542420 CD59P13987 128 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 GNB3P16520 340 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 SLC6A9P48067 706 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 TMEM50BP56557 158 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 UBA52P62987 128 aaKnown RBP8.63□□□□□ -1.03
SS18-205ENST00000542420 AIMP2Q13155 320 aaKnown RBP8.63□□□□□ -1.03
SS18-205ENST00000542420 HLXQ14774 488 aaPredicted RBP8.63□□□□□ -1.03
SS18-205ENST00000542420 PLAC9Q5JTB6 97 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 LHFPL1Q86WI0 220 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 PXT1Q8NFP0 134 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 NUDCD2Q8WVJ2 157 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 NKD1Q969G9 470 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 SPSB4Q96A44 273 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 FOXB1Q99853 325 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 PRDM14Q9GZV8 571 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 CHST6Q9GZX3 395 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 SDHAF2Q9NX18 166 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 COMMD9Q9P000 198 aa8.63□□□□□ -1.03
SS18-205ENST00000542420 TNRC6AQ8NDV7 1962 aaKnown RBP8.62□□□□□ -1.03
SS18-205ENST00000542420 CXCL13O43927 109 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 CRTAPO75718 401 aaPredicted RBP8.62□□□□□ -1.03
SS18-205ENST00000542420 HLA-AP01891 365 aaKnown RBP8.62□□□□□ -1.03
SS18-205ENST00000542420 S100A6P06703 90 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 SLC2A1P11166 492 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 MGMTP16455 207 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 GDF1P27539 372 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 CD82P27701 267 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 HRH1P35367 487 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 SCGB2B2Q4G0G5 96 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 TMEM128Q5BJH2 165 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 ABHD17BQ5VST6 288 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 ATRAIDQ6UW56 229 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 PLXDC2Q6UX71 529 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 YRDCQ86U90 279 aaKnown RBP8.62□□□□□ -1.03
SS18-205ENST00000542420 STPG2Q8N412 459 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 OR2M7Q8NG81 312 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 SGK3Q96BR1 496 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 METTL9Q9H1A3 318 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 ZNF703Q9H7S9 590 aaPredicted RBP8.62□□□□□ -1.03
SS18-205ENST00000542420 GPR35Q9HC97 309 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 LRFN1Q9P244 771 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 GPR132Q9UNW8 380 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 PIGLQ9Y2B2 252 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 IGHV3-15A0A0B4J1V0 119 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 LNP1A1A4G5 178 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 F5H5K5 113 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 EFSO43281 561 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 TOXO94900 526 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 SNAPINO95295 136 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 H2AFB1P0C5Y9 115 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 DTYMKP23919 212 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 RPL35P42766 123 aaKnown RBP8.62□□□□□ -1.03
SS18-205ENST00000542420 OR8B8Q15620 311 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 UBE2V2Q15819 145 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms