RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 BOD1Q96IK1 185 aa7.9□□□□□ -1.15
LIMCH1-218ENST00000513024 Q96M85 177 aa7.9□□□□□ -1.15
LIMCH1-218ENST00000513024 GPR137Q96N19 417 aa7.9□□□□□ -1.15
LIMCH1-218ENST00000513024 TEX101Q9BY14 249 aa7.9□□□□□ -1.15
LIMCH1-218ENST00000513024 FAM234AQ9H0X4 552 aa7.9□□□□□ -1.15
LIMCH1-218ENST00000513024 PPT2Q9UMR5 302 aa7.9□□□□□ -1.15
LIMCH1-218ENST00000513024 TMEM184BQ9Y519 407 aaPredicted RBP7.9□□□□□ -1.15
LIMCH1-218ENST00000513024 USP3Q9Y6I4 520 aa7.9□□□□□ -1.15
LIMCH1-218ENST00000513024 KIR2DS1A0A191URI9 304 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 POU3F2P20265 443 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 HOXD9P28356 352 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 KIR2DS4P43632 304 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 ASCL1P50553 236 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 RAC1P63000 192 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 KIR2DS1Q14954 304 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 TMEM64Q6YI46 380 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 TMEM99Q8N816 258 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 OR51H1Q8NH63 302 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 ARRDC3Q96B67 414 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 ANAPC16Q96DE5 110 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 WDR61Q9GZS3 305 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 TMEM38AQ9H6F2 299 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 DNAJC4Q9NNZ3 241 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 DNMT3BQ9UBC3 853 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 ABHD16AO95870 558 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 ADH4P08319 380 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 GABRA1P14867 456 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 SRP14P37108 136 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 CCR2P41597 374 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 NPBWR2P48146 333 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 ZNF77Q15935 545 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 CLLU1OSQ5K130 101 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 NIT1Q86X76 327 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 SPICQ8N5J4 248 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 LILRA3Q8N6C8 439 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 RNF133Q8WVZ7 376 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 SARAFQ96BY9 339 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 NUDT11Q96G61 164 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 PRSS16Q9NQE7 514 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 CBLN4Q9NTU7 201 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 HCFC1R1Q9NWW0 138 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 TMEM238LA0A1B0GVL6 79 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 A6NJY4 79 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 CORTO00230 105 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 XRCC2O43543 280 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 C1SP09871 688 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 POU3F3P20264 500 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 GPR12P47775 334 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 RPS23P62266 143 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 SSBP1Q04837 148 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 RPEL1Q2QD12 228 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 LINC00303Q3SY05 128 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 CCSMST1Q4G0I0 132 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 XKR7Q5GH72 579 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 TEX30Q5JUR7 227 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 NUBPLQ8TB37 319 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 NUDCD2Q8WVJ2 157 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 RTN4IP1Q8WWV3 396 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 MS4A3Q96HJ5 214 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 BANF2Q9H503 90 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 IKZF5Q9H5V7 419 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 OR51B4Q9Y5P0 310 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 LOC107984156A0A0G2JMH3 177 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 ZNF729A6NN14 1252 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 PIAS2O75928 621 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 COX6CP09669 75 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 CTXN2P0C2S0 81 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 DCDP81605 110 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 FABP5Q01469 135 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 ELAVL1Q15717 326 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 NKAIN1Q4KMZ8 207 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 OTUD1Q5VV17 481 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 NKAIN2Q5VXU1 208 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 TMEM179BQ7Z7N9 219 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 ARL17AQ8IVW1 177 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 FBXO17Q96EF6 278 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 ADAT3Q96EY9 351 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 KLF16Q9BXK1 252 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 ZBP1Q9H171 429 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 HINT3Q9NQE9 182 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 SLC25A37Q9NYZ2 338 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 NAT8Q9UHE5 227 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 A4GNTQ9UNA3 340 aa7.89□□□□□ -1.15
LIMCH1-218ENST00000513024 ZNF195O14628 629 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 SLC2A10O95528 541 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 EIF4EP06730 217 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 HOXB1P14653 301 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 PI3P19957 117 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 DCTDP32321 178 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 HERVK_113P61574 105 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 Q56UQ5 140 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 FAHD2BQ6P2I3 314 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 GLIPR1L1Q6UWM5 242 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 HTR3DQ70Z44 454 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 TM4SF18Q96CE8 201 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 FAHD2AQ96GK7 314 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 INSM2Q96T92 566 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 ZNF2Q9BSG1 426 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 SLIRPQ9GZT3 109 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 TNFRSF12AQ9NP84 129 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms