RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 WDR82Q6UXN9 313 aa12.36□□□□□ -0.43
USP4-212ENST00000486549 C11orf53Q8IXP5 236 aa12.36□□□□□ -0.43
USP4-212ENST00000486549 RDH10Q8IZV5 341 aa12.36□□□□□ -0.43
USP4-212ENST00000486549 GCSAMQ8N6F7 178 aa12.36□□□□□ -0.43
USP4-212ENST00000486549 SPATA3Q8NHX4 192 aa12.36□□□□□ -0.43
USP4-212ENST00000486549 RNF166Q96A37 237 aaPredicted RBP12.36□□□□□ -0.43
USP4-212ENST00000486549 PELI1Q96FA3 418 aa12.36□□□□□ -0.43
USP4-212ENST00000486549 MYCBPQ99417 103 aaPredicted RBP12.36□□□□□ -0.43
USP4-212ENST00000486549 INPP5EQ9NRR6 644 aa12.36□□□□□ -0.43
USP4-212ENST00000486549 MRPS18AQ9NVS2 196 aaKnown RBP12.36□□□□□ -0.43
USP4-212ENST00000486549 HSPE1-MOB4S4R3N1 261 aa12.36□□□□□ -0.43
USP4-212ENST00000486549 TRAV20A0A0B4J274 112 aa12.35□□□□□ -0.43
USP4-212ENST00000486549 OOEPA6NGQ2 149 aa12.35□□□□□ -0.43
USP4-212ENST00000486549 F5H0A9 414 aaPredicted RBP12.35□□□□□ -0.43
USP4-212ENST00000486549 LGALS8O00214 317 aa12.35□□□□□ -0.43
USP4-212ENST00000486549 ESCO2Q56NI9 601 aa12.35□□□□□ -0.43
USP4-212ENST00000486549 CLVS2Q5SYC1 327 aa12.35□□□□□ -0.43
USP4-212ENST00000486549 FAHD2BQ6P2I3 314 aaPredicted RBP12.35□□□□□ -0.43
USP4-212ENST00000486549 LYPD2Q6UXB3 125 aa12.35□□□□□ -0.43
USP4-212ENST00000486549 SYS1Q8N2H4 156 aa12.35□□□□□ -0.43
USP4-212ENST00000486549 SCCPDHQ8NBX0 429 aa12.35□□□□□ -0.43
USP4-212ENST00000486549 ITFG2Q969R8 447 aa12.35□□□□□ -0.43
USP4-212ENST00000486549 FAHD2AQ96GK7 314 aa12.35□□□□□ -0.43
USP4-212ENST00000486549 TLNRD1Q9H1K6 362 aa12.35□□□□□ -0.43
USP4-212ENST00000486549 FGF20Q9NP95 211 aaPredicted RBP12.35□□□□□ -0.43
USP4-212ENST00000486549 FRRS1LQ9P0K9 344 aa12.35□□□□□ -0.43
USP4-212ENST00000486549 MIOXQ9UGB7 285 aa12.35□□□□□ -0.43
USP4-212ENST00000486549 WNK2Q9Y3S1 2297 aa12.35□□□□□ -0.43
USP4-212ENST00000486549 IRGMA1A4Y4 181 aa12.34□□□□□ -0.43
USP4-212ENST00000486549 OR5B21A6NL26 309 aa12.34□□□□□ -0.43
USP4-212ENST00000486549 PHF1O43189 567 aaPredicted RBP12.34□□□□□ -0.43
USP4-212ENST00000486549 FOXH1O75593 365 aa12.34□□□□□ -0.43
USP4-212ENST00000486549 LIMS3P0CW19 117 aa12.34□□□□□ -0.43
USP4-212ENST00000486549 LIMS4P0CW20 117 aa12.34□□□□□ -0.43
USP4-212ENST00000486549 ZFP36P26651 326 aaKnown RBP12.34□□□□□ -0.43
USP4-212ENST00000486549 ETV1P50549 477 aa12.34□□□□□ -0.43
USP4-212ENST00000486549 GNG3P63215 75 aa12.34□□□□□ -0.43
USP4-212ENST00000486549 ALKBH1Q13686 389 aaKnown RBP12.34□□□□□ -0.43
USP4-212ENST00000486549 TMEM244Q5VVB8 128 aa12.34□□□□□ -0.43
USP4-212ENST00000486549 DCDC5Q6ZRR9 648 aa12.34□□□□□ -0.43
USP4-212ENST00000486549 NLRC3Q7RTR2 1065 aa12.34□□□□□ -0.43
USP4-212ENST00000486549 KRT74Q7RTS7 529 aa12.34□□□□□ -0.43
USP4-212ENST00000486549 OR8B3Q8NGG8 313 aa12.34□□□□□ -0.43
USP4-212ENST00000486549 NPRL2Q8WTW4 380 aa12.34□□□□□ -0.43
USP4-212ENST00000486549 TMEM158Q8WZ71 300 aa12.34□□□□□ -0.43
USP4-212ENST00000486549 TFAP2CQ92754 450 aa12.34□□□□□ -0.43
USP4-212ENST00000486549 NEIL1Q96FI4 390 aaPredicted RBP12.34□□□□□ -0.43
USP4-212ENST00000486549 OR8B2Q96RD0 313 aa12.34□□□□□ -0.43
USP4-212ENST00000486549 ZNF649Q9BS31 505 aa12.34□□□□□ -0.43
USP4-212ENST00000486549 TRAV38-1A0A0B4J264 116 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 ANKRD61A6NGH8 418 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 DHRS7CA6NNS2 312 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 E9PI62 339 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 AKR7A2O43488 359 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 XPNPEP2O43895 674 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 FSTL3O95633 263 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 LHBP01229 141 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 GYPAP02724 150 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 WNT2P09544 360 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 SRD5A1P18405 259 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 MYL12AP19105 171 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 DCKP27707 260 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 PITPNBP48739 271 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 GBX2P52951 348 aaPredicted RBP12.33□□□□□ -0.44
USP4-212ENST00000486549 GNB2P62879 340 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 KCNJ8Q15842 424 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 DCAF12L2Q5VW00 463 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 TMEM42Q69YG0 159 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 FDX2Q6P4F2 183 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 HAGHLQ6PII5 290 aaPredicted RBP12.33□□□□□ -0.44
USP4-212ENST00000486549 Q6ZSR3 168 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 FAM90A1Q86YD7 464 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 ZNF676Q8N7Q3 588 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 BPIFB6Q8NFQ5 453 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 OR5A2Q8NGI9 324 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 TRMT10AQ8TBZ6 339 aaKnown RBP12.33□□□□□ -0.44
USP4-212ENST00000486549 GGHQ92820 318 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 SEH1LQ96EE3 360 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 TMEM80Q96HE8 168 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 SSBP3Q9BWW4 388 aaPredicted RBP12.33□□□□□ -0.44
USP4-212ENST00000486549 JAM3Q9BX67 310 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 VCX3BQ9H321 246 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 ERVK-18Q9QC07 812 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 DIMT1Q9UNQ2 313 aaKnown RBP12.33□□□□□ -0.44
USP4-212ENST00000486549 LRCH1Q9Y2L9 728 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 DOCK11Q5JSL3 2073 aa12.33□□□□□ -0.44
USP4-212ENST00000486549 A0A0G2JMP0 313 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 A0A0X1KG70 313 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 OR4C45A6NMZ5 311 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 ADAM20O43506 726 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 RHBDL1O75783 438 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 ATP6V1G2O95670 118 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 ZNF12P17014 697 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 ZNF20P17024 532 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 SRP14P37108 136 aaKnown RBP12.32□□□□□ -0.44
USP4-212ENST00000486549 CCR9P51686 369 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 FAM76BQ5HYJ3 339 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 OR2G6Q5TZ20 316 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 TEX36Q5VZQ5 186 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 LAIR2Q6ISS4 152 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms