RNA–Protein interactions for RNA: ENST00000479161.5

C9orf3-217, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 942 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-217ENST00000479161 CLIC3O95833 236 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 NRASP01111 189 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 GRPP07492 148 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 HTR1AP08908 422 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 ACAA1P09110 424 aaPredicted RBP12.96□□□□□ -0.33
C9orf3-217ENST00000479161 LIMS3P0CW19 117 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 LIMS4P0CW20 117 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 MUC1P15941 1255 aaPredicted RBP12.96□□□□□ -0.33
C9orf3-217ENST00000479161 PSMB10P40306 273 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 MED21Q13503 144 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 SMN1Q16637 294 aaKnown RBP12.96□□□□□ -0.33
C9orf3-217ENST00000479161 CCDC58Q4VC31 144 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 WDR82Q6UXN9 313 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 LHFPL3Q86UP9 236 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 GCSAMQ8N6F7 178 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 CNIH3Q8TBE1 160 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 NRG4Q8WWG1 115 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 PP6455Q8WZ26 134 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 RNF170Q96K19 258 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 C4orf36Q96KX1 117 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 TMEM246Q9BRR3 403 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 OR51I2Q9H344 312 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 NARFLQ9H6Q4 476 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 UFSP2Q9NUQ7 469 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 C1orf123Q9NWV4 160 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 KAAG1Q9UBP8 84 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 GTF2A1LQ9UNN4 478 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 ARHGAP32A7KAX9 2087 aa12.96□□□□□ -0.33
C9orf3-217ENST00000479161 DNHD1Q96M86 4753 aa12.95□□□□□ -0.34
C9orf3-217ENST00000479161 EFCAB10A6NFE3 127 aa12.95□□□□□ -0.34
C9orf3-217ENST00000479161 A6NLC8 198 aa12.95□□□□□ -0.34
C9orf3-217ENST00000479161 OR4C45A6NMZ5 311 aa12.95□□□□□ -0.34
C9orf3-217ENST00000479161 SRRM5B3KS81 715 aa12.95□□□□□ -0.34
C9orf3-217ENST00000479161 J3QLW9 94 aa12.95□□□□□ -0.34
C9orf3-217ENST00000479161 P2RY10O00398 339 aa12.95□□□□□ -0.34
C9orf3-217ENST00000479161 PLPP2O43688 288 aa12.95□□□□□ -0.34
C9orf3-217ENST00000479161 GNAO1P09471 354 aa12.95□□□□□ -0.34
C9orf3-217ENST00000479161 FAHP16930 419 aa12.95□□□□□ -0.34
C9orf3-217ENST00000479161 ZNF19P17023 458 aa12.95□□□□□ -0.34
C9orf3-217ENST00000479161 HNF1AP20823 631 aa12.95□□□□□ -0.34
C9orf3-217ENST00000479161 KIR3DL2P43630 455 aa12.95□□□□□ -0.34
C9orf3-217ENST00000479161 NPY4RP50391 375 aa12.95□□□□□ -0.34
C9orf3-217ENST00000479161 ALKBH1Q13686 389 aaKnown RBP12.95□□□□□ -0.34
C9orf3-217ENST00000479161 CHRFAM7AQ494W8 412 aa12.95□□□□□ -0.34
C9orf3-217ENST00000479161 NLRC3Q7RTR2 1065 aa12.95□□□□□ -0.34
C9orf3-217ENST00000479161 DVL3Q92997 716 aaPredicted RBP12.95□□□□□ -0.34
C9orf3-217ENST00000479161 NEIL1Q96FI4 390 aaPredicted RBP12.95□□□□□ -0.34
C9orf3-217ENST00000479161 DNTTIP1Q9H147 329 aa12.95□□□□□ -0.34
C9orf3-217ENST00000479161 HIF1ANQ9NWT6 349 aa12.95□□□□□ -0.34
C9orf3-217ENST00000479161 EXOSC1Q9Y3B2 195 aaKnown RBP12.95□□□□□ -0.34
C9orf3-217ENST00000479161 OOEPA6NGQ2 149 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 TMEM212A6NML5 194 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 SERPINA3P01011 423 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 CCDC159P0C7I6 412 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 FAM157CP0CG43 387 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 HSPA13P48723 471 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 NANOS3P60323 173 aaKnown RBP12.94□□□□□ -0.34
C9orf3-217ENST00000479161 ESCO2Q56NI9 601 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 FAM120AOSQ5T036 256 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 ATPAF1Q5TC12 328 aaPredicted RBP12.94□□□□□ -0.34
C9orf3-217ENST00000479161 RNLSQ5VYX0 342 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 TMPRSS11AQ6ZMR5 421 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 UTS2BQ765I0 119 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 ZNF573Q86YE8 665 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 SCCPDHQ8NBX0 429 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 OR52N1Q8NH53 320 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 ZNF671Q8TAW3 534 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 RPS4Y2Q8TD47 263 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 TMEM80Q96HE8 168 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 DMRTB1Q96MA1 342 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 CHST5Q9GZS9 411 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 FGF23Q9GZV9 251 aaPredicted RBP12.94□□□□□ -0.34
C9orf3-217ENST00000479161 SHARPINQ9H0F6 387 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 PPP1R3EQ9H7J1 279 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 UBAP1Q9NZ09 502 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 HHLA2Q9UM44 414 aa12.94□□□□□ -0.34
C9orf3-217ENST00000479161 A0A0G2JMP0 313 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 IGHV3-64DA0A0J9YX35 117 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 A0A0X1KG70 313 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 LOC107986453A0A1B0GWG9 222 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 ANKRD61A6NGH8 418 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 ZNF732B4DXR9 585 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 CDIPTO14735 213 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 NOS1APO75052 506 aaPredicted RBP12.93□□□□□ -0.34
C9orf3-217ENST00000479161 GATBO75879 557 aaKnown RBP12.93□□□□□ -0.34
C9orf3-217ENST00000479161 ALX3O95076 343 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 MYL12AP19105 171 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 MPZP25189 248 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 GBX2P52951 348 aaPredicted RBP12.93□□□□□ -0.34
C9orf3-217ENST00000479161 MICBQ29980 383 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 CR1LQ2VPA4 569 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 LAIR2Q6ISS4 152 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 ZNF826PQ6ZT77 177 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 DNAAF1Q8NEP3 725 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 OR4M2Q8NGB6 313 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 BEX2Q9BXY8 128 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 ISG20L2Q9H9L3 353 aaKnown RBP12.93□□□□□ -0.34
C9orf3-217ENST00000479161 PLEKHA1Q9HB21 404 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 FKBP14Q9NWM8 211 aa12.93□□□□□ -0.34
C9orf3-217ENST00000479161 RASL12Q9NYN1 266 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms