RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 C22orf15Q8WYQ4 148 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 GCDHQ92947 438 aaPredicted RBP5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 SLC7A6OSQ96CW6 309 aaPredicted RBP5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 REEP6Q96HR9 211 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 ABHD6Q9BV23 337 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 OR10A2Q9H208 303 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 MMADHCQ9H3L0 296 aaPredicted RBP5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 RGCCQ9H4X1 137 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 C1orf123Q9NWV4 160 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 KIF17Q9P2E2 1029 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 RNF7Q9UBF6 113 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 DNAJB9Q9UBS3 223 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 CLN8Q9UBY8 286 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 POMPQ9Y244 141 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 TRAV38-1A0A0B4J264 116 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 KIR2DS1A0A191URI9 304 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 hCG_38984A0A1B0GV85 526 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 hCG_1807616A0A1W2PRN6 198 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 TMEM89A2RUT3 159 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 OOEPA6NGQ2 149 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 LGALS8O00214 317 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 NDUFA2O43678 99 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 ENSAO43768 121 aaKnown RBP5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 TIPRLO75663 272 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 GRPP07492 148 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 PRKACGP22612 351 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 CD80P33681 288 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 PSMB10P40306 273 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 COMPP49747 757 aaPredicted RBP5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 RPS7P62081 194 aaKnown RBP5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 IL13RA1P78552 427 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 FAM3AP98173 230 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 PAX2Q02962 417 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 OR8B8Q15620 311 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 GFOD2Q3B7J2 385 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 KLF17Q5JT82 389 aaPredicted RBP5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 WDR25Q64LD2 544 aaPredicted RBP5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 SFRP4Q6FHJ7 346 aaPredicted RBP5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 LYPD2Q6UXB3 125 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 DOK3Q7L591 496 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 PRSS45Q7RTY3 260 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 CPOQ8IVL8 374 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 PARP8Q8N3A8 854 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 FTMTQ8N4E7 242 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 SIGLECL1Q8N7X8 197 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 ZDHHC22Q8N966 263 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 BOLLQ8N9W6 283 aaKnown RBP5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 PAPD5Q8NDF8 572 aaKnown RBP5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 C19orf18Q8NEA5 215 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 CSNK2A3Q8NEV1 391 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 OTOSQ8NHW6 89 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 THEM6Q8WUY1 208 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 SGK3Q96BR1 496 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 UPRTQ96BW1 309 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 ZMYND19Q96E35 227 aaPredicted RBP5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 NRBF2Q96F24 287 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 PGAM5Q96HS1 289 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 TECTBQ96PL2 329 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 AMELYQ99218 206 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 NUDT16L1Q9BRJ7 211 aaKnown RBP5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 PAPOLGQ9BWT3 736 aaKnown RBP5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 PRRG3Q9BZD7 231 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 MS4A7Q9GZW8 240 aaPredicted RBP5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 ZMAT3Q9HA38 289 aaKnown RBP5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 SLC25A19Q9HC21 320 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 ABCB9Q9NP78 766 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 ESM1Q9NQ30 184 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 PAPOLBQ9NRJ5 636 aaKnown RBP5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 CHCHD3Q9NX63 227 aaKnown RBP5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 DNAJC27Q9NZQ0 273 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 ERVK-18Q9QC07 812 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 ZNF391Q9UJN7 358 aa5.65□□□□□ -1.5
CCDC88A-213ENST00000476903 ANK2Q01484 3957 aa5.65□□□□□ -1.51
CCDC88A-213ENST00000476903 TRAV40A0A0B4J280 105 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 ANXA2P2A6NMY6 339 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 ADAM20O43506 726 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 SELENOFO60613 162 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 LIPFP07098 398 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 SLC2A5P22732 501 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 NAA10P41227 235 aaPredicted RBP5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 MTNR1AP48039 350 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 RASSF2P50749 326 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 CRISP1P54107 249 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 FGF12P61328 243 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 UBA52P62987 128 aaKnown RBP5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 IL5RAQ01344 420 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 BNIP1Q12981 228 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 SNAPC1Q16533 368 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 LCN1P1Q5VSP4 162 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 TMEM236Q5W0B7 351 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 C16orf87Q6PH81 154 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 ZNF841Q6ZN19 808 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 ZNF826PQ6ZT77 177 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 C9orf139Q6ZV77 190 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 GCSAMQ8N6F7 178 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 BBS1Q8NFJ9 593 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 OR1M1Q8NGA1 313 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 OR5K1Q8NHB7 308 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 RTL8AQ9BWD3 113 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 YIPF3Q9GZM5 350 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms