RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 RTBDNQ9BSG5 229 aaPredicted RBP16.68■□□□□ 0.26
VIM-203ENST00000469543 SHANK1Q9Y566 2161 aa16.68■□□□□ 0.26
VIM-203ENST00000469543 IGKV1-27A0A075B6S5 117 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 P04436 131 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 FKBP2P26885 142 aaKnown RBP16.67■□□□□ 0.26
VIM-203ENST00000469543 DLSTP36957 453 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 C9orf135Q5VTT2 229 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 CLEC18BQ6UXF7 455 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 PNLDC1Q8NA58 520 aaKnown RBP16.67■□□□□ 0.26
VIM-203ENST00000469543 CSNK2A3Q8NEV1 391 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 MARVELD3Q96A59 401 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 DHRS9Q9BPW9 319 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 NAA11Q9BSU3 229 aaPredicted RBP16.67■□□□□ 0.26
VIM-203ENST00000469543 GPR132Q9UNW8 380 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 SPEF1Q9Y4P9 236 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 NUPL2O15504 423 aaKnown RBP16.67■□□□□ 0.26
VIM-203ENST00000469543 VAMP5O95183 116 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 DUS4LO95620 317 aaKnown RBP16.67■□□□□ 0.26
VIM-203ENST00000469543 CER1O95813 267 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 KNG1P01042 644 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 GSTP1P09211 210 aaKnown RBP16.67■□□□□ 0.26
VIM-203ENST00000469543 TMEM225BP0DP42 221 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 OTX1P32242 354 aaPredicted RBP16.67■□□□□ 0.26
VIM-203ENST00000469543 MTCP1P56278 107 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 TAF9Q16594 264 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 DEFB123Q8N688 67 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 URM1Q9BTM9 101 aaKnown RBP16.67■□□□□ 0.26
VIM-203ENST00000469543 CHST5Q9GZS9 411 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 V9GYS6 101 aa16.67■□□□□ 0.26
VIM-203ENST00000469543 C19orf67A6NJJ6 358 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 LRRC3CA6NJW4 275 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 MSTNO14793 375 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 SGCEO43556 437 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 NAT2P11245 290 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 ZNF32P17041 273 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 GSK3AP49840 483 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 SRYQ05066 204 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 ACER2Q5QJU3 275 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 PXDC1Q5TGL8 231 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 FAM27BQ5VT28 67 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 ELP2Q6IA86 826 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 FAM89BQ8N5H3 189 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 OR5H2Q8NGV7 314 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 OR10D3Q8NH80 312 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 RRNAD1Q96FB5 475 aaKnown RBP16.66■□□□□ 0.26
VIM-203ENST00000469543 PECRQ9BY49 303 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 HES7Q9BYE0 225 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 EHFQ9NZC4 300 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 PCDHGA1Q9Y5H4 931 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 FAM221AA4D161 298 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 DHRS7CA6NNS2 312 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 LCATP04180 440 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 PRF1P14222 555 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 PGAM2P15259 253 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 MPZP25189 248 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 OR3A2P47893 321 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 RAC3P60763 192 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 HIST1H3AP68431 136 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 ANKRD55Q3KP44 614 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 HIST2H3PS2Q5TEC6 136 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 HIST2H3AQ71DI3 136 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 PDZD9Q8IXQ8 264 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 NTNG2Q96CW9 530 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 S100A13Q99584 98 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 OCSTAMPQ9BR26 566 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 FAAP24Q9BTP7 215 aa16.66■□□□□ 0.26
VIM-203ENST00000469543 A0A0U1RQV5 110 aa16.65■□□□□ 0.26
VIM-203ENST00000469543 ZNF716A6NP11 495 aa16.65■□□□□ 0.26
VIM-203ENST00000469543 H0YIZ8 118 aa16.65■□□□□ 0.26
VIM-203ENST00000469543 CELA3AP09093 270 aa16.65■□□□□ 0.26
VIM-203ENST00000469543 CALCRP30988 508 aa16.65■□□□□ 0.26
VIM-203ENST00000469543 DUSP3P51452 185 aaPredicted RBP16.65■□□□□ 0.26
VIM-203ENST00000469543 TMEM128Q5BJH2 165 aa16.65■□□□□ 0.26
VIM-203ENST00000469543 DCAF12Q5T6F0 453 aa16.65■□□□□ 0.26
VIM-203ENST00000469543 KCNRGQ8N5I3 272 aa16.65■□□□□ 0.26
VIM-203ENST00000469543 CT55Q8WUE5 264 aa16.65■□□□□ 0.26
VIM-203ENST00000469543 HAS2Q92819 552 aa16.65■□□□□ 0.26
VIM-203ENST00000469543 LOXL2Q9Y4K0 774 aa16.65■□□□□ 0.26
VIM-203ENST00000469543 CSAG2Q9Y5P2 127 aa16.65■□□□□ 0.26
VIM-203ENST00000469543 EP300Q09472 2414 aaPredicted RBP16.65■□□□□ 0.26
VIM-203ENST00000469543 KIAA1549Q9HCM3 1950 aa16.65■□□□□ 0.26
VIM-203ENST00000469543 DBX1A6NMT0 343 aa16.65■□□□□ 0.26
VIM-203ENST00000469543 SPINK2P20155 84 aa16.65■□□□□ 0.26
VIM-203ENST00000469543 ZNF84P51523 738 aa16.65■□□□□ 0.26
VIM-203ENST00000469543 BTN1A1Q13410 526 aa16.65■□□□□ 0.26
VIM-203ENST00000469543 ACKR4Q9NPB9 350 aa16.65■□□□□ 0.26
VIM-203ENST00000469543 KANTRA0A1W2PQU2 76 aa16.64■□□□□ 0.26
VIM-203ENST00000469543 FOXI3A8MTJ6 420 aaPredicted RBP16.64■□□□□ 0.26
VIM-203ENST00000469543 HPP00738 406 aa16.64■□□□□ 0.26
VIM-203ENST00000469543 OPRM1P35372 400 aa16.64■□□□□ 0.26
VIM-203ENST00000469543 FGL1Q08830 312 aa16.64■□□□□ 0.26
VIM-203ENST00000469543 TRA2AQ13595 282 aaKnown RBP eCLIP16.64■□□□□ 0.26
VIM-203ENST00000469543 CEACAM16Q2WEN9 425 aa16.64■□□□□ 0.26
VIM-203ENST00000469543 PSMF1Q92530 271 aa16.64■□□□□ 0.26
VIM-203ENST00000469543 REEP6Q96HR9 211 aa16.64■□□□□ 0.26
VIM-203ENST00000469543 OR10C1Q96KK4 312 aa16.64■□□□□ 0.26
VIM-203ENST00000469543 RNF126Q9BV68 326 aa16.64■□□□□ 0.26
VIM-203ENST00000469543 P4HTMQ9NXG6 502 aa16.64■□□□□ 0.26
VIM-203ENST00000469543 SYNGR3O43761 229 aa16.64■□□□□ 0.25
VIM-203ENST00000469543 SCGNO76038 276 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms