RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 SLAMF1Q13291 335 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 C1orf185Q5T7R7 199 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 FRMPD2BQ6IN97 320 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 NIPAL1Q6NVV3 410 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 RNASEKQ6P5S7 137 aaKnown RBP3.26□□□□□ -1.89
VPS29-202ENST00000447578 CCBE1Q6UXH8 406 aaPredicted RBP3.26□□□□□ -1.89
VPS29-202ENST00000447578 OLIG3Q7RTU3 272 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 H2BFWTQ7Z2G1 175 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 HMGN2P46Q86SG4 172 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 TRIM69Q86WT6 500 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 RBM45Q8IUH3 476 aaKnown RBP3.26□□□□□ -1.89
VPS29-202ENST00000447578 SNX29P2Q8IUI4 249 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 EGFL6Q8IUX8 553 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 LYG1Q8N1E2 194 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 CSNK1A1LQ8N752 337 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 LINC01555Q8NAE3 123 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 C17orf47Q8NEP4 570 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 TTLQ8NG68 377 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 OR4D9Q8NGE8 314 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 OR4D11Q8NGI4 311 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 OR5D16Q8NGK9 328 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 OR2A1Q8NGT9 310 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 OR2L8Q8NGY9 312 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 FLVCR1-AS1Q8TAF5 88 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 DYNC2LI1Q8TCX1 351 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 ZHX1-C8orf76Q96EF9 292 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 TMEM80Q96HE8 168 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 POM121L2Q96KW2 1035 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 IL4I1Q96RQ9 567 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 TIMM29Q9BSF4 260 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 SLIRPQ9GZT3 109 aaKnown RBP3.26□□□□□ -1.89
VPS29-202ENST00000447578 OR51E2Q9H255 320 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 DCSTAMPQ9H295 470 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 PPDPFQ9H3Y8 114 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 DSN1Q9H410 356 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 CRLF2Q9HC73 371 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 NEK6Q9HC98 313 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 MRPS30Q9NP92 439 aaKnown RBP3.26□□□□□ -1.89
VPS29-202ENST00000447578 LHX9Q9NQ69 397 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 NANSQ9NR45 359 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 FBXL12Q9NXK8 326 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 DNAJC27Q9NZQ0 273 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 PISDQ9UG56 409 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 PPIAL4AQ9Y536 164 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 PLXNB3Q9ULL4 1909 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 GOLGB1Q14789 3259 aaKnown RBP3.26□□□□□ -1.89
VPS29-202ENST00000447578 PLXNA2O75051 1894 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 FER1L5A0AVI2 2057 aa3.26□□□□□ -1.89
VPS29-202ENST00000447578 IGHV3-16A0A0C4DH30 117 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 IGKV1-8A0A0C4DH67 115 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 HAT1O14929 419 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 SLC31A1O15431 190 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 ARHGEF9O43307 516 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 ENTPD6O75354 484 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 UPK3AO75631 287 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 AIFM1O95831 613 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 ADRA2AP08913 450 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 RNH1P13489 461 aaKnown RBP3.25□□□□□ -1.89
VPS29-202ENST00000447578 CSNK2A2P19784 350 aaPredicted RBP3.25□□□□□ -1.89
VPS29-202ENST00000447578 BCL3P20749 454 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 HIST1H1TP22492 207 aaPredicted RBP3.25□□□□□ -1.89
VPS29-202ENST00000447578 TEAD1P28347 426 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 CD1CP29017 333 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 CD40LGP29965 261 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 CMPK1P30085 196 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 PEBP1P30086 187 aaKnown RBP3.25□□□□□ -1.89
VPS29-202ENST00000447578 OR1D4P47884 311 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 RGS6P49758 472 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 BCAP31P51572 246 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 CRISP3P54108 245 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 TAS2R41P59536 307 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 RAB8AP61006 207 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 RPS21P63220 83 aaKnown RBP3.25□□□□□ -1.89
VPS29-202ENST00000447578 BTN3A2P78410 334 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 IFITM3Q01628 133 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 RELAQ04206 551 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 KLRB1Q12918 225 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 ILKQ13418 452 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 GNA13Q14344 377 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 SLC10A1Q14973 349 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 OXA1LQ15070 435 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 ZNF404Q494X3 552 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 ZNF506Q5JVG8 444 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 RAET1LQ5VY80 246 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 C12orf73Q69YU5 71 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 TMEM107Q6UX40 140 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 CASP12Q6UXS9 341 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 LINC00299Q6ZSB3 139 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 FAM92BQ6ZTR7 304 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 SH2D6Q7Z4S9 175 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 COMTD1Q86VU5 262 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 SLC34A3Q8N130 599 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 SLC22A18ASQ8N1D0 253 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 TBC1D19Q8N5T2 526 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 ACOT4Q8N9L9 421 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 B3GNT7Q8NFL0 401 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 OR2L5Q8NG80 312 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 OR2L3Q8NG85 312 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 OR4E2Q8NGC2 313 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 OR4Q3Q8NH05 313 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms