RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.75□□□□□ -0.211e-8■■□□□ 13.8
SF3A1-204ENST00000447376 TRAV38-1A0A0B4J264 116 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 SYT7O43581 403 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 XPNPEP2O43895 674 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 DHRS3O75911 302 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 ZNF205O95201 554 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 PTBP3O95758 552 aaKnown RBP13.75□□□□□ -0.21
SF3A1-204ENST00000447376 IGLV3-1P01715 115 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 LIMS3P0CW19 117 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 LIMS4P0CW20 117 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 CCR9P51686 369 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 LCN2P80188 198 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 KRTAP21-3Q3LHN1 58 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 ZNF404Q494X3 552 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 TMEM244Q5VVB8 128 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 AHSA2Q719I0 299 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 OR1M1Q8NGA1 313 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 OR2G2Q8NGZ5 317 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 PPP1R14AQ96A00 147 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 PELI1Q96FA3 418 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 NEIL1Q96FI4 390 aaPredicted RBP13.75□□□□□ -0.21
SF3A1-204ENST00000447376 RNF170Q96K19 258 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 CNBD2Q96M20 576 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 SLC22A13Q9Y226 551 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 PIGLQ9Y2B2 252 aa13.75□□□□□ -0.21
SF3A1-204ENST00000447376 DHRS7CA6NNS2 312 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 CEACAM18A8MTB9 384 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 J3QLI3 93 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 LGALS8O00214 317 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 SLC1A7O00341 560 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 P2RY10O00398 339 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 NDUFA2O43678 99 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 CCDC159P0C7I6 412 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 ACKR3P25106 362 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 ETV1P50549 477 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 GNB2P62879 340 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 ALKBH1Q13686 389 aaKnown RBP13.74□□□□□ -0.21
SF3A1-204ENST00000447376 WDR38Q5JTN6 314 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 LAIR2Q6ISS4 152 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 DCDC5Q6ZRR9 648 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 IL17RELQ6ZVW7 336 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 PRSS35Q8N3Z0 413 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 ITPKCQ96DU7 683 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 TMEM246Q9BRR3 403 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 ZNF649Q9BS31 505 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 ISG20L2Q9H9L3 353 aaKnown RBP13.74□□□□□ -0.21
SF3A1-204ENST00000447376 TMEM165Q9HC07 324 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 BLOC1S6Q9UL45 172 aa13.74□□□□□ -0.21
SF3A1-204ENST00000447376 PTGES3LE9PB15 166 aa13.73□□□□□ -0.21
SF3A1-204ENST00000447376 MYL12BO14950 172 aa13.73□□□□□ -0.21
SF3A1-204ENST00000447376 ISG15P05161 165 aa13.73□□□□□ -0.21
SF3A1-204ENST00000447376 CCL1P22362 96 aa13.73□□□□□ -0.21
SF3A1-204ENST00000447376 PMELP40967 661 aa13.73□□□□□ -0.21
SF3A1-204ENST00000447376 TGM4P49221 684 aa13.73□□□□□ -0.21
SF3A1-204ENST00000447376 ZNF154Q13106 437 aa13.73□□□□□ -0.21
SF3A1-204ENST00000447376 ODF4Q2M2E3 257 aa13.73□□□□□ -0.21
SF3A1-204ENST00000447376 CCDC58Q4VC31 144 aa13.73□□□□□ -0.21
SF3A1-204ENST00000447376 PLCXD3Q63HM9 321 aa13.73□□□□□ -0.21
SF3A1-204ENST00000447376 ZNF676Q8N7Q3 588 aa13.73□□□□□ -0.21
SF3A1-204ENST00000447376 DEFB108BQ8NET1 73 aa13.73□□□□□ -0.21
SF3A1-204ENST00000447376 OR52N1Q8NH53 320 aa13.73□□□□□ -0.21
SF3A1-204ENST00000447376 OR5P3Q8WZ94 311 aa13.73□□□□□ -0.21
SF3A1-204ENST00000447376 SSBP3Q9BWW4 388 aaPredicted RBP13.73□□□□□ -0.21
SF3A1-204ENST00000447376 COMMD4Q9H0A8 199 aa13.73□□□□□ -0.21
SF3A1-204ENST00000447376 FRRS1LQ9P0K9 344 aa13.73□□□□□ -0.21
SF3A1-204ENST00000447376 CLN8Q9UBY8 286 aa13.73□□□□□ -0.21
SF3A1-204ENST00000447376 ERGIC3Q9Y282 383 aa13.73□□□□□ -0.21
SF3A1-204ENST00000447376 SONP18583 2426 aaKnown RBP13.73□□□□□ -0.21
SF3A1-204ENST00000447376 MALRD1Q5VYJ5 2156 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 PPIAL4CA0A0B4J2A2 164 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 A0A1B0GTI1 187 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 OOEPA6NGQ2 149 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 OR5B21A6NL26 309 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 TMEM212A6NML5 194 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 C3orf80F5H4A9 247 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 NRASP01111 189 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 FAHP16930 419 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 PITPNBP48739 271 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 GNG3P63215 75 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 MICBQ29980 383 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 CEACAM21Q3KPI0 293 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 RBM48Q5RL73 367 aaKnown RBP13.72□□□□□ -0.21
SF3A1-204ENST00000447376 CLVS2Q5SYC1 327 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 RPL22L1Q6P5R6 122 aaKnown RBP13.72□□□□□ -0.21
SF3A1-204ENST00000447376 MOB3CQ70IA8 216 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 LRRC29Q8WV35 223 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 FKBP14Q9NWM8 211 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 BABAM2Q9NXR7 383 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 ERVK-18Q9QC07 812 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 DNAJB11Q9UBS4 358 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 V9GYS6 101 aa13.72□□□□□ -0.21
SF3A1-204ENST00000447376 TRBV2A0A0J9YWF9 115 aa13.71□□□□□ -0.21
SF3A1-204ENST00000447376 LOC107986453A0A1B0GWG9 222 aa13.71□□□□□ -0.21
SF3A1-204ENST00000447376 F5H0A9 414 aaPredicted RBP13.71□□□□□ -0.21
SF3A1-204ENST00000447376 CDIPTO14735 213 aa13.71□□□□□ -0.21
SF3A1-204ENST00000447376 DENRO43583 198 aaKnown RBP13.71□□□□□ -0.21
SF3A1-204ENST00000447376 SERPINA3P01011 423 aa13.71□□□□□ -0.21
SF3A1-204ENST00000447376 CDK1P06493 297 aa13.71□□□□□ -0.21
SF3A1-204ENST00000447376 WNT2P09544 360 aa13.71□□□□□ -0.21
SF3A1-204ENST00000447376 MUC1P15941 1255 aaPredicted RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms