RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 IER2Q9BTL4 223 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 SF3B5Q9BWJ5 86 aaKnown RBP11.99□□□□□ -0.49
COL6A3-207ENST00000433762 ZNF700Q9H0M5 742 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 PCDHB16Q9NRJ7 776 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 C1orf123Q9NWV4 160 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 NDRG3Q9UGV2 375 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 ZNF391Q9UJN7 358 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 HSF4Q9ULV5 492 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 C14orf166Q9Y224 244 aaKnown RBP11.99□□□□□ -0.49
COL6A3-207ENST00000433762 DHHO43323 396 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 CTSDP07339 412 aaPredicted RBP11.99□□□□□ -0.49
COL6A3-207ENST00000433762 FAM157CP0CG43 387 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 MYF5P13349 255 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 BLVRBP30043 206 aaPredicted RBP11.99□□□□□ -0.49
COL6A3-207ENST00000433762 MRPS34P82930 218 aaKnown RBP11.99□□□□□ -0.49
COL6A3-207ENST00000433762 NKAPLQ5M9Q1 402 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 GUSBP11Q6P575 273 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 RNF144BQ7Z419 303 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 ADAMTS17Q8TE56 1095 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 RRNAD1Q96FB5 475 aaKnown RBP11.99□□□□□ -0.49
COL6A3-207ENST00000433762 EHFQ9NZC4 300 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 FOXD3Q9UJU5 478 aaPredicted RBP11.99□□□□□ -0.49
COL6A3-207ENST00000433762 POMT1Q9Y6A1 747 aa11.99□□□□□ -0.49
COL6A3-207ENST00000433762 GJE1A6NN92 205 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 ATP6V1G2-DDX39BF2Z307 99 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 SMAD9O15198 467 aaKnown RBP11.98□□□□□ -0.49
COL6A3-207ENST00000433762 RAMP1O60894 148 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 GAPDHP04406 335 aaKnown RBP11.98□□□□□ -0.49
COL6A3-207ENST00000433762 HPNP05981 417 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 SFTPDP35247 375 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 DHPSP49366 369 aaPredicted RBP11.98□□□□□ -0.49
COL6A3-207ENST00000433762 DEFA5Q01523 94 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 ANKRD55Q3KP44 614 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 CHRFAM7AQ494W8 412 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 SULF2Q8IWU5 870 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 SMIM8Q96KF7 97 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 SLC5A7Q9GZV3 580 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 SH2D2AQ9NP31 389 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 ASF1BQ9NVP2 202 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 LPAR3Q9UBY5 353 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 ZNF629Q9UEG4 869 aaPredicted RBP11.98□□□□□ -0.49
COL6A3-207ENST00000433762 ASCC3Q8N3C0 2202 aaKnown RBP11.98□□□□□ -0.49
COL6A3-207ENST00000433762 SIGLEC6O43699 453 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 LIFP15018 202 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 DTYMKP23919 212 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 CXCL12P48061 93 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 PJVKQ0ZLH3 352 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 FAM27BQ5VT28 67 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 UNQ6126/PRO20091Q6UXV3 157 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 SPAG16Q8N0X2 631 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 PAQR8Q8TEZ7 354 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 ZC3H10Q96K80 434 aaKnown RBP11.98□□□□□ -0.49
COL6A3-207ENST00000433762 IMMP1LQ96LU5 166 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 Q96M66 194 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 TSNAXQ99598 290 aaKnown RBP11.98□□□□□ -0.49
COL6A3-207ENST00000433762 SEC11CQ9BY50 192 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 SLC39A1Q9NY26 324 aa11.98□□□□□ -0.49
COL6A3-207ENST00000433762 IGHV1-45A0A0A0MS14 117 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 CCDC163A0A0D9SF12 145 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 NPIPA2E9PIF3 369 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 NPIPA3F8WFD2 350 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 STMND1H3BQB6 276 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 NDUFA2O43678 99 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 IFNA2P01563 188 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 SCRN3Q0VDG4 424 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 UBE2V2Q15819 145 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 ZNF528Q3MIS6 628 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 PLXDC2Q6UX71 529 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 RTN4RL2Q86UN3 420 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 MAML2Q8IZL2 1156 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-207ENST00000433762 OR9K2Q8NGE7 335 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 SAP25Q8TEE9 199 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 CNTNAP3BQ96NU0 1288 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 METTL8Q9H825 291 aaKnown RBP11.97□□□□□ -0.49
COL6A3-207ENST00000433762 TUBD1Q9UJT1 453 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 CABIN1Q9Y6J0 2220 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 A0A1W2PP11 408 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 M0R135 149 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 CD63P08962 238 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 RAC1P63000 192 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 TRA2AQ13595 282 aaKnown RBP eCLIP11.97□□□□□ -0.49
COL6A3-207ENST00000433762 RAB35Q15286 201 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 SLC9A3R2Q15599 337 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 ASCL4Q6XD76 172 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 C20orf196Q8IYI0 205 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 ZNF799Q96GE5 643 aa11.97□□□□□ -0.49
COL6A3-207ENST00000433762 SNAPINO95295 136 aa11.96□□□□□ -0.49
COL6A3-207ENST00000433762 CRYGSP22914 178 aa11.96□□□□□ -0.49
COL6A3-207ENST00000433762 HOXA6P31267 233 aa11.96□□□□□ -0.49
COL6A3-207ENST00000433762 RBMXP38159 391 aaKnown RBP11.96□□□□□ -0.49
COL6A3-207ENST00000433762 BLOC1S1P78537 153 aa11.96□□□□□ -0.49
COL6A3-207ENST00000433762 RSPO1Q2MKA7 263 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-207ENST00000433762 DHRS7BQ6IAN0 325 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-207ENST00000433762 ZNF585AQ6P3V2 769 aa11.96□□□□□ -0.49
COL6A3-207ENST00000433762 ZNF100Q8IYN0 542 aa11.96□□□□□ -0.49
COL6A3-207ENST00000433762 NARS2Q96I59 477 aaKnown RBP11.96□□□□□ -0.49
COL6A3-207ENST00000433762 ST6GALNAC5Q9BVH7 336 aa11.96□□□□□ -0.49
COL6A3-207ENST00000433762 ZFP57Q9NU63 452 aa11.96□□□□□ -0.49
COL6A3-207ENST00000433762 PRELID3BQ9Y3B1 194 aa11.96□□□□□ -0.49
COL6A3-207ENST00000433762 EML6Q6ZMW3 1958 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms