RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 AMDHD1Q96NU7 426 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 OR52B2Q96RD2 323 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 FOXC2Q99958 501 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 KCNS3Q9BQ31 491 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 NUDT9Q9BW91 350 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 SLIRPQ9GZT3 109 aaKnown RBP3.3□□□□□ -1.88
HMGB3-203ENST00000430118 NAA50Q9GZZ1 169 aaKnown RBP3.3□□□□□ -1.88
HMGB3-203ENST00000430118 OR51B6Q9H340 312 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 ASB8Q9H765 288 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 RNF122Q9H9V4 155 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 IL1RL2Q9HB29 575 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 NIT2Q9NQR4 276 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 CTPS2Q9NRF8 586 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 FAM120CQ9NX05 1096 aaKnown RBP3.3□□□□□ -1.88
HMGB3-203ENST00000430118 SDHAF2Q9NX18 166 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 RAB20Q9NX57 234 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 SCP2D1Q9UJQ7 156 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 STAP1Q9ULZ2 295 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 SLC22A14Q9Y267 594 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 PIGLQ9Y2B2 252 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 MRPS28Q9Y2Q9 187 aaKnown RBP3.3□□□□□ -1.88
HMGB3-203ENST00000430118 POLR3HQ9Y535 204 aaPredicted RBP3.3□□□□□ -1.88
HMGB3-203ENST00000430118 TNFRSF18Q9Y5U5 241 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 PEX16Q9Y5Y5 336 aa3.3□□□□□ -1.88
HMGB3-203ENST00000430118 RP1L1Q8IWN7 2480 aaPredicted RBP3.29□□□□□ -1.88
HMGB3-203ENST00000430118 IGLV7-46A0A075B6I9 117 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 EXOC1LA0A1B0GW35 172 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 A0A1B0GW55 424 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 TCRBV3S1A0A5B6 114 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 METTL21EPA6NDL7 271 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 CLDN24A6NM45 220 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 FOXI3A8MTJ6 420 aaPredicted RBP3.29□□□□□ -1.88
HMGB3-203ENST00000430118 G3V2T6 193 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 AIPO00170 330 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 TAPBPO15533 448 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 MED6O75586 246 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 SUPT7LO94864 414 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 ZNF432O94892 652 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 OTCP00480 354 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 LALBAP00709 142 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 IGLV3-25P01717 112 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 IGHG3P01860 377 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 AMBPP02760 352 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 FGF1P05230 155 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 C2P06681 752 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 ZSCAN5DPP0CG00 497 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 DUX4L2P0CJ85 424 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 DUX4L3P0CJ86 424 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 DUX4L4P0CJ87 422 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 DUX4L5P0CJ88 424 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 DUX4L6P0CJ89 424 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 DUX4L7P0CJ90 424 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 PNMTP11086 282 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 IFI30P13284 250 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 MUC1P15941 1255 aaPredicted RBP3.29□□□□□ -1.88
HMGB3-203ENST00000430118 SPNP16150 400 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 RPA3P35244 121 aaPredicted RBP3.29□□□□□ -1.88
HMGB3-203ENST00000430118 TAGLN2P37802 199 aaKnown RBP3.29□□□□□ -1.88
HMGB3-203ENST00000430118 GCLMP48507 274 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 SRP9P49458 86 aaKnown RBP3.29□□□□□ -1.88
HMGB3-203ENST00000430118 GNG10P50151 68 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 RHOAP61586 193 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 RND3P61587 244 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 NUTF2P61970 127 aaKnown RBP3.29□□□□□ -1.88
HMGB3-203ENST00000430118 TMED2Q15363 201 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 ZNHIT3Q15649 155 aaPredicted RBP3.29□□□□□ -1.88
HMGB3-203ENST00000430118 ZIC1Q15915 447 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 ZNF404Q494X3 552 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 PAGE2BQ5JRK9 111 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 C1orf185Q5T7R7 199 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 LAMTOR1Q6IAA8 161 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 FAM199XQ6PEV8 388 aaPredicted RBP3.29□□□□□ -1.88
HMGB3-203ENST00000430118 Q6ZS92 163 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 LANCL3Q6ZV70 420 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 TMUB2Q71RG4 321 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 EIF3MQ7L2H7 374 aaKnown RBP3.29□□□□□ -1.88
HMGB3-203ENST00000430118 STRADAQ7RTN6 431 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 LRRTM1Q86UE6 522 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 DEFB107AQ8IZN7 70 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 ZNF561Q8N587 486 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 ATPAF2Q8N5M1 289 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 C9orf106Q8NAJ2 232 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 MFSD9Q8NBP5 474 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 STXBP6Q8NFX7 210 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 OR2L3Q8NG85 312 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 OR5D13Q8NGL4 314 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 OR4D5Q8NGN0 318 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 OR6K2Q8NGY2 324 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 OR2L8Q8NGY9 312 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 OR10J5Q8NHC4 309 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 ITLN2Q8WWU7 325 aaPredicted RBP3.29□□□□□ -1.88
HMGB3-203ENST00000430118 OR1E3Q8WZA6 343 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 HGDQ93099 445 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 ASB9Q96DX5 294 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 NUS1Q96E22 293 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 C14orf144Q96I85 54 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 C9orf85Q96MD7 179 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 WFIKKN1Q96NZ8 548 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 OR2M4Q96R27 311 aa3.29□□□□□ -1.88
HMGB3-203ENST00000430118 PFDN5Q99471 154 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms