RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 NKAIN2Q5VXU1 208 aa10.67□□□□□ -0.7
SYNPO-202ENST00000394243 CALHM3Q86XJ0 350 aa10.67□□□□□ -0.7
SYNPO-202ENST00000394243 WDR61Q9GZS3 305 aaKnown RBP10.67□□□□□ -0.7
SYNPO-202ENST00000394243 TMEM191AQ9H0A3 160 aa10.67□□□□□ -0.7
SYNPO-202ENST00000394243 MED29Q9NX70 200 aa10.67□□□□□ -0.7
SYNPO-202ENST00000394243 RASL12Q9NYN1 266 aa10.67□□□□□ -0.7
SYNPO-202ENST00000394243 PITPNC1Q9UKF7 332 aa10.67□□□□□ -0.7
SYNPO-202ENST00000394243 DAPP1Q9UN19 280 aa10.67□□□□□ -0.7
SYNPO-202ENST00000394243 V9GYH0 126 aa10.67□□□□□ -0.7
SYNPO-202ENST00000394243 F12P00748 615 aaPredicted RBP10.67□□□□□ -0.7
SYNPO-202ENST00000394243 DRD1P21728 446 aa10.67□□□□□ -0.7
SYNPO-202ENST00000394243 ZBTB25P24278 435 aa10.67□□□□□ -0.7
SYNPO-202ENST00000394243 TMEM251Q8N6I4 163 aa10.67□□□□□ -0.7
SYNPO-202ENST00000394243 SLC6A13Q9NSD5 602 aa10.67□□□□□ -0.7
SYNPO-202ENST00000394243 ANKRD20A5PA0PJZ0 165 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 ASPDHA6ND91 283 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 CTAG2O75638 210 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 HAAOP46952 286 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 PPIAP62937 165 aaKnown RBP10.66□□□□□ -0.7
SYNPO-202ENST00000394243 SLC38A11Q08AI6 406 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 A6NDN8 102 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 PGA3P0DJD8 388 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 DTD1Q8TEA8 209 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 RGP1Q92546 391 aaPredicted RBP10.66□□□□□ -0.7
SYNPO-202ENST00000394243 MENTQ9BUN1 341 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 HELTA6NFD8 242 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 SMIM17P0DL12 118 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 CD99P14209 185 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 GALP22466 123 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 DCDP81605 110 aaKnown RBP10.66□□□□□ -0.7
SYNPO-202ENST00000394243 BCL2L2Q92843 193 aaPredicted RBP10.66□□□□□ -0.7
SYNPO-202ENST00000394243 OR6C1Q96RD1 312 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 TXNIPQ9H3M7 391 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 ANKRD10Q9NXR5 420 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 TIMM10BQ9Y5J6 103 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 A0A1W2PNR3 127 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 TMEM189-UBE2V1I3L0A0 370 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 SEMA7AO75326 666 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 WNT11O96014 354 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 LGALS4P56470 323 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 UBE2V2Q15819 145 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 VWA2Q5GFL6 755 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 ALKAL1Q6UXT8 129 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 OR2C3Q8N628 320 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 ANAPC16Q96DE5 110 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 ARHGAP5-AS1Q96IT6 56 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 TP53RKQ96S44 253 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 TBX15Q96SF7 602 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 SLC17A5Q9NRA2 495 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 PRSS50Q9UI38 385 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 HPXP02790 462 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 CDC34P49427 236 aaPredicted RBP10.66□□□□□ -0.7
SYNPO-202ENST00000394243 HIST3H3Q16695 136 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 MBLAC1A4D2B0 266 aaPredicted RBP10.66□□□□□ -0.7
SYNPO-202ENST00000394243 C5orf49A4QMS7 147 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 ICAM2P13598 275 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 TMPRSS11FQ6ZWK6 438 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 OR5M9Q8NGP3 310 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 MAP1LC3CQ9BXW4 147 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 SRD5A3Q9H8P0 318 aa10.66□□□□□ -0.7
SYNPO-202ENST00000394243 NSUN5P2Q63ZY6 315 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 IGHV3-20A0A0C4DH32 117 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 CSN3P07498 182 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 FAHP16930 419 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 SPOCK3Q9BQ16 436 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 C20orf141Q9NUB4 165 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 B9D1Q9UPM9 204 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 LRP12Q9Y561 859 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.65□□□□□ -0.7
SYNPO-202ENST00000394243 LSRQ86X29 649 aaPredicted RBP10.65□□□□□ -0.7
SYNPO-202ENST00000394243 TGIF2LXQ8IUE1 241 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 MRPS24Q96EL2 167 aaKnown RBP10.65□□□□□ -0.7
SYNPO-202ENST00000394243 CXCL16Q9H2A7 254 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 IFT172Q9UG01 1749 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 IGLV3-10A0A075B6K4 115 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 TRBV23-1A0A0A0MS06 115 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 LRRC30A6NM36 301 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 K7ESM1 405 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 FGF17O60258 216 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 IGHA2P01877 340 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 ACAA2P42765 397 aaKnown RBP10.65□□□□□ -0.7
SYNPO-202ENST00000394243 DYNLT3P51808 116 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 ACVR1Q04771 509 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 IL13RA2Q14627 380 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 ZNF385CQ66K41 422 aaPredicted RBP10.65□□□□□ -0.7
SYNPO-202ENST00000394243 OR1L6Q8NGR2 347 aa10.65□□□□□ -0.7
SYNPO-202ENST00000394243 NEIL1Q96FI4 390 aaPredicted RBP10.65□□□□□ -0.7
SYNPO-202ENST00000394243 UTP23Q9BRU9 249 aaKnown RBP10.65□□□□□ -0.7
SYNPO-202ENST00000394243 AKIRIN1Q9H9L7 192 aaPredicted RBP10.65□□□□□ -0.7
SYNPO-202ENST00000394243 B4DEV8 164 aa10.65□□□□□ -0.71
SYNPO-202ENST00000394243 TARM1B6A8C7 271 aa10.65□□□□□ -0.71
SYNPO-202ENST00000394243 ADAP1O75689 374 aa10.65□□□□□ -0.71
SYNPO-202ENST00000394243 KLKB1P03952 638 aa10.65□□□□□ -0.71
SYNPO-202ENST00000394243 SHBQ15464 509 aa10.65□□□□□ -0.71
SYNPO-202ENST00000394243 METRNLQ641Q3 311 aa10.65□□□□□ -0.71
SYNPO-202ENST00000394243 SLC25A43Q8WUT9 341 aaPredicted RBP10.65□□□□□ -0.71
SYNPO-202ENST00000394243 ATG101Q9BSB4 218 aa10.65□□□□□ -0.71
SYNPO-202ENST00000394243 HPP00738 406 aa10.65□□□□□ -0.71
SYNPO-202ENST00000394243 ZNF738Q8NE65 137 aa10.65□□□□□ -0.71
SYNPO-202ENST00000394243 OR10G4Q8NGN3 311 aa10.65□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms