RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 APOC1P02654 83 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 TFF1P04155 84 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 UBCP0CG48 685 aaKnown RBP7.9□□□□□ -1.14
USP4-202ENST00000351842 PRAMEF6Q5VXH4 476 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 DEGS2Q6QHC5 323 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 USP43Q70EL4 1123 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 SERPINA12Q8IW75 414 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 OR52N4Q8NGI2 321 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 OR5L1Q8NGL2 311 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 ZNF671Q8TAW3 534 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 MED30Q96HR3 178 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 JAM3Q9BX67 310 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 CLEC4MQ9H2X3 399 aaPredicted RBP7.9□□□□□ -1.14
USP4-202ENST00000351842 METTL17Q9H7H0 456 aaPredicted RBP7.9□□□□□ -1.14
USP4-202ENST00000351842 COMMD3Q9UBI1 195 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 A0A1B0GTI1 187 aa7.9□□□□□ -1.15
USP4-202ENST00000351842 ANKRD30BLA7E2S9 258 aa7.9□□□□□ -1.15
USP4-202ENST00000351842 NDUFS7O75251 213 aa7.9□□□□□ -1.15
USP4-202ENST00000351842 SERPINA3P01011 423 aa7.9□□□□□ -1.15
USP4-202ENST00000351842 RPS19P39019 145 aaKnown RBP7.9□□□□□ -1.15
USP4-202ENST00000351842 SELENOVP59797 346 aa7.9□□□□□ -1.15
USP4-202ENST00000351842 HIST1H3AP68431 136 aa7.9□□□□□ -1.15
USP4-202ENST00000351842 ZNF45Q02386 682 aa7.9□□□□□ -1.15
USP4-202ENST00000351842 SLC22A6Q4U2R8 563 aa7.9□□□□□ -1.15
USP4-202ENST00000351842 TMEM255AQ5JRV8 349 aa7.9□□□□□ -1.15
USP4-202ENST00000351842 FAM201AQ5SY85 155 aa7.9□□□□□ -1.15
USP4-202ENST00000351842 HIST2H3PS2Q5TEC6 136 aa7.9□□□□□ -1.15
USP4-202ENST00000351842 SFRP4Q6FHJ7 346 aaPredicted RBP7.9□□□□□ -1.15
USP4-202ENST00000351842 HIST2H3AQ71DI3 136 aa7.9□□□□□ -1.15
USP4-202ENST00000351842 TGIF2LYQ8IUE0 185 aa7.9□□□□□ -1.15
USP4-202ENST00000351842 LYSMD2Q8IV50 215 aa7.9□□□□□ -1.15
USP4-202ENST00000351842 RNF170Q96K19 258 aa7.9□□□□□ -1.15
USP4-202ENST00000351842 MRPS7Q9Y2R9 242 aaKnown RBP7.9□□□□□ -1.15
USP4-202ENST00000351842 MALRD1Q5VYJ5 2156 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 E7EQL1 145 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 OGG1O15527 345 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 DHRS3O75911 302 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 ZNF35P13682 527 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 COX6B1P14854 86 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 MAP2K3P46734 347 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 MTCP1P56278 107 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 KLF3P57682 345 aaPredicted RBP7.89□□□□□ -1.15
USP4-202ENST00000351842 RIPPLY1Q0D2K3 151 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 ZNF404Q494X3 552 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 SPRNQ5BIV9 151 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 DDI2Q5TDH0 399 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 ZNF787Q6DD87 383 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 ZNF627Q7L945 461 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 PRSS45Q7RTY3 260 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 HIST1H2AAQ96QV6 131 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 ABCB9Q9NP78 766 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 CMAHPQ9Y471 501 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 A0A1W2PP11 408 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 NRASP01111 189 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 TMEM225BP0DP42 221 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 SRMP19623 302 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 HAAOP46952 286 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 PRDX4Q13162 271 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 UBE2V2Q15819 145 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 BEX5Q5H9J7 111 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 HAGHLQ6PII5 290 aaPredicted RBP7.89□□□□□ -1.15
USP4-202ENST00000351842 CCDC36Q8IYA8 594 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 MS4A15Q8N5U1 240 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 OR5T2Q8NGG2 359 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 LILRB1Q8NHL6 650 aaPredicted RBP7.89□□□□□ -1.15
USP4-202ENST00000351842 CYYR1Q96J86 154 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 SLC30A2Q9BRI3 323 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 C1QTNF5Q9BXJ0 243 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 SLITRK2Q9H156 845 aa7.89□□□□□ -1.15
USP4-202ENST00000351842 ZMAT3Q9HA38 289 aaKnown RBP7.89□□□□□ -1.15
USP4-202ENST00000351842 ZNF275Q9NSD4 429 aaPredicted RBP7.89□□□□□ -1.15
USP4-202ENST00000351842 CRNNQ9UBG3 495 aaPredicted RBP7.89□□□□□ -1.15
USP4-202ENST00000351842 SF3B6Q9Y3B4 125 aaKnown RBP7.89□□□□□ -1.15
USP4-202ENST00000351842 AKR7A2O43488 359 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 TSPAN9O75954 239 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 CRYZL1O95825 349 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 PTTG1O95997 202 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 OTX1P32242 354 aaPredicted RBP7.88□□□□□ -1.15
USP4-202ENST00000351842 OR8G1Q15617 311 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 MPPED2Q15777 294 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 NRN1LQ496H8 165 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 YIF1BQ5BJH7 314 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 DOK3Q7L591 496 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 IZUMO1Q8IYV9 350 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 TMEM171Q8WVE6 324 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 ELMOD3Q96FG2 381 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 ADAT1Q9BUB4 502 aaKnown RBP7.88□□□□□ -1.15
USP4-202ENST00000351842 BANF2Q9H503 90 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 DCAF16Q9NXF7 216 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 CACNG2Q9Y698 323 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 ZSCAN5BA6NJL1 495 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 DEFB108AA8MXU0 73 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 ZNF732B4DXR9 585 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 GMDSO60547 372 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 SRSF10O75494 262 aaKnown RBP7.88□□□□□ -1.15
USP4-202ENST00000351842 IGLV1-44P01699 117 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 SNRPBP14678 240 aaKnown RBP7.88□□□□□ -1.15
USP4-202ENST00000351842 SERPINF1P36955 418 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 TNK1Q13470 666 aa7.88□□□□□ -1.15
USP4-202ENST00000351842 TIMM50Q3ZCQ8 353 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms