RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 C1orf123Q9NWV4 160 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 PRODH2Q9UF12 536 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 UNC80Q8N2C7 3258 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 TRAV36DV7A0A075B6V5 113 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 ELOA3CA0A087WX78 387 aaPredicted RBP5.99□□□□□ -1.45
VPS39-202ENST00000348544 A0A1B0GWJ7 208 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 A6NCN8 305 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 TLCD2A6NGC4 264 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 MKRN2OSH3BPM6 223 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 TCAPO15273 167 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 CYB5BO43169 146 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 XRCC2O43543 280 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 UTS2O95399 124 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 TRGC1P0CF51 173 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 HPGDP15428 266 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 CXCR1P25024 350 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 IL2RGP31785 369 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 TAGLN2P37802 199 aaKnown RBP5.99□□□□□ -1.45
VPS39-202ENST00000348544 RBMXP38159 391 aaKnown RBP5.99□□□□□ -1.45
VPS39-202ENST00000348544 OR3A2P47893 321 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 DHPSP49366 369 aaPredicted RBP5.99□□□□□ -1.45
VPS39-202ENST00000348544 SEC13P55735 322 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 SNU13P55769 128 aaKnown RBP5.99□□□□□ -1.45
VPS39-202ENST00000348544 CSNK2A1P68400 391 aaPredicted RBP5.99□□□□□ -1.45
VPS39-202ENST00000348544 IGLV3-21P80748 117 aaPredicted RBP5.99□□□□□ -1.45
VPS39-202ENST00000348544 GLO1Q04760 184 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 FUT7Q11130 342 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 SGCGQ13326 291 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 CDCP2Q5VXM1 449 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 ZNF385CQ66K41 422 aaPredicted RBP5.99□□□□□ -1.45
VPS39-202ENST00000348544 OR2T2Q6IF00 324 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 TMEM182Q6ZP80 229 aaPredicted RBP5.99□□□□□ -1.45
VPS39-202ENST00000348544 GALNTL5Q7Z4T8 443 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 C5orf24Q7Z6I8 188 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 CSNK2A3Q8NEV1 391 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 MFSD8Q8NHS3 518 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 CA5BP1Q8WTZ4 195 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 PATE1Q8WXA2 126 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 EMG1Q92979 244 aaKnown RBP5.99□□□□□ -1.45
VPS39-202ENST00000348544 PLEKHA2Q9HB19 425 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 FAM60AQ9NP50 221 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 CENPMQ9NSP4 180 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 THAP10Q9P2Z0 257 aaPredicted RBP5.99□□□□□ -1.45
VPS39-202ENST00000348544 TP53TG5Q9Y2B4 290 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 MRPS28Q9Y2Q9 187 aaKnown RBP5.99□□□□□ -1.45
VPS39-202ENST00000348544 STRAPQ9Y3F4 350 aaKnown RBP5.99□□□□□ -1.45
VPS39-202ENST00000348544 SLCO1B1Q9Y6L6 691 aa5.99□□□□□ -1.45
VPS39-202ENST00000348544 PHF3Q92576 2039 aaKnown RBP5.98□□□□□ -1.45
VPS39-202ENST00000348544 ARHGEF17Q96PE2 2063 aaPredicted RBP5.98□□□□□ -1.45
VPS39-202ENST00000348544 A0A087WWC5 75 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 LINC01553A4QN01 128 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 SCDO00767 359 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 SLC31A1O15431 190 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 SYT7O43581 403 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 DIRAS3O95661 229 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 PTBP3O95758 552 aaKnown RBP5.98□□□□□ -1.45
VPS39-202ENST00000348544 QDPRP09417 244 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 COX5BP10606 129 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 IL11P20809 199 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 CEACAM6P40199 344 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 ASCL1P50553 236 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 MMP16P51512 607 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 NKX6-1P78426 367 aaPredicted RBP5.98□□□□□ -1.45
VPS39-202ENST00000348544 DLK1P80370 383 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 NHLH2Q02577 135 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 ARFRP1Q13795 201 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 OR8G1Q15617 311 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 DMRTC1Q5HYR2 192 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 CYB5R2Q6BCY4 276 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 PSRC1Q6PGN9 363 aaPredicted RBP5.98□□□□□ -1.45
VPS39-202ENST00000348544 SPSB3Q6PJ21 355 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 AVL9Q8NBF6 648 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 TSACCQ96A04 125 aaPredicted RBP5.98□□□□□ -1.45
VPS39-202ENST00000348544 PACRGQ96M98 296 aaPredicted RBP5.98□□□□□ -1.45
VPS39-202ENST00000348544 DGAT2Q96PD7 388 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 HIST1H2BLQ99880 126 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 TMEM59Q9BXS4 323 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 PBOV1Q9GZY1 135 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 SLC25A31Q9H0C2 315 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 SUSD2Q9UGT4 822 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 PCNX3Q9H6A9 2034 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 BORCS7-ASMTA0A0B4J1R7 106 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 A8MWP6 167 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 H0Y8X5 98 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 PHOX2AO14813 284 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 DXOO77932 396 aaKnown RBP5.98□□□□□ -1.45
VPS39-202ENST00000348544 NSA2O95478 260 aaKnown RBP5.98□□□□□ -1.45
VPS39-202ENST00000348544 SRP19P09132 144 aaKnown RBP5.98□□□□□ -1.45
VPS39-202ENST00000348544 H2BFMP0C1H6 154 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 CEBPGP53567 150 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 UBE2KP61086 200 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 RND3P61587 244 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 RPS21P63220 83 aaKnown RBP5.98□□□□□ -1.45
VPS39-202ENST00000348544 PRR22Q8IZ63 422 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 OR10S1Q8NGN2 331 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 RNF133Q8WVZ7 376 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 MRPL37Q9BZE1 423 aaKnown RBP5.98□□□□□ -1.45
VPS39-202ENST00000348544 NXF5Q9H1B4 397 aaKnown RBP5.98□□□□□ -1.45
VPS39-202ENST00000348544 TCEAL2Q9H3H9 227 aaPredicted RBP5.98□□□□□ -1.45
VPS39-202ENST00000348544 CRLF2Q9HC73 371 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms