RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 SPATA46Q5T0L3 261 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 OR2T2Q6IF00 324 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 RNF144BQ7Z419 303 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 ANGPTL5Q86XS5 388 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 ZSCAN4Q8NAM6 433 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 PXT1Q8NFP0 134 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 SYNPRQ8TBG9 265 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 C15orf40Q8WUR7 153 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 OR5P3Q8WZ94 311 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 PIGCQ92535 297 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 BORCS8Q96FH0 119 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 S100A16Q96FQ6 103 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 CRIM1Q9NZV1 1036 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 GPR160Q9UJ42 338 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 PURGQ9UJV8 347 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 RAB22AQ9UL26 194 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 ZFYVE26Q68DK2 2539 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 IGLV3-9A0A075B6K5 115 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 ISPDA4D126 451 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 B8ZZF3 427 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 CTAG2O75638 210 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 HLA-DQB1P01920 261 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 VSIG8P0DPA2 414 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 GNLYP22749 145 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 MPV17P39210 176 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 MMP15P51511 669 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 EFNB2P52799 333 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 MTCP1P56278 107 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 MRPS10P82664 201 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 SNTB2Q13425 540 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 UNC119Q13432 240 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 TMEM255AQ5JRV8 349 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 AWAT2Q6E213 333 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 GLIPR1L1Q6UWM5 242 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 MOB3CQ70IA8 216 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 TMEM200AQ86VY9 491 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 SAXO1Q8IYX7 474 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 Q8NFD4 153 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 KCNG3Q8TAE7 436 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 TMEM171Q8WVE6 324 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 POM121Q96HA1 1249 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 WFIKKN1Q96NZ8 548 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 SPACA5Q96QH8 159 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 GPER1Q99527 375 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 FGF23Q9GZV9 251 aaPredicted RBP12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 OR51B6Q9H340 312 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 ZNF442Q9H7R0 627 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 KCNJ16Q9NPI9 418 aa12.77□□□□□ -0.37
CCDC88C-202ENST00000334448 DPRXA6NFQ7 191 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 FAM90A27PA6NNH2 459 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 ATP6V1G2-DDX39BF2Z307 99 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 XRCC3O43542 346 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 LILRA1O75019 489 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 ZNF780AO75290 641 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 IGHV3-13P01766 116 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 MPZP25189 248 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 UQCRFS1P47985 274 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 PTH2RP49190 550 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 PITPNAQ00169 270 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 PLA2G7Q13093 441 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 FAM76BQ5HYJ3 339 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 RAB12Q6IQ22 244 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 RGS7BPQ6MZT1 257 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 C16orf87Q6PH81 154 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 DNM1P46Q6ZS02 220 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 BIVMQ86UB2 503 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 WFDC8Q8IUA0 241 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 OR8G5Q8NG78 346 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 NPRL2Q8WTW4 380 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 CA5BP1Q8WTZ4 195 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 TNFAIP8L1Q8WVP5 186 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 BBC3Q96PG8 261 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 NKX3-1Q99801 234 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 CST11Q9H112 138 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 NDRG3Q9UGV2 375 aa12.76□□□□□ -0.37
CCDC88C-202ENST00000334448 A0A0G2JMP0 313 aa12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 A0A0X1KG70 313 aa12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 GSTZ1O43708 216 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 GCH1P30793 250 aa12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 GNG3P63215 75 aa12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 IFITM3Q01628 133 aa12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 PDZK1IP1Q13113 114 aa12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 IL18Q14116 193 aa12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 GPR176Q14439 515 aa12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 CDSNQ15517 529 aa12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 ANKHD1Q8IWZ3 2542 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 SPERTQ8NA61 448 aa12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 OR4M2Q8NGB6 313 aa12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 ITLN2Q8WWU7 325 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 MRPS24Q96EL2 167 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 RADILQ96JH8 1075 aa12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 HIST1H2AAQ96QV6 131 aa12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 PCNX1Q96RV3 2341 aa12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 ABHD1Q96SE0 405 aa12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 MICU1Q9BPX6 476 aa12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 TM2D1Q9BX74 207 aa12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 PKIBQ9C010 78 aa12.75□□□□□ -0.37
CCDC88C-202ENST00000334448 FAM230AA0A1W2PPH8 454 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 NKX2-6A6NCS4 301 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 METTL21EPA6NDL7 271 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms