RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 RRADP55042 308 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 TMEM241Q24JQ0 296 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 TMPRSS11FQ6ZWK6 438 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 OR51F2Q8NH61 342 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 POM121Q96HA1 1249 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 CIB3Q96Q77 187 aaPredicted RBP10.34□□□□□ -0.75
VPS39-201ENST00000318006 RPP25Q9BUL9 199 aaKnown RBP10.34□□□□□ -0.75
VPS39-201ENST00000318006 BET1LQ9NYM9 111 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 C7orf66A4D0T2 115 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 LILRA5A6NI73 299 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 LMO7DNF2Z398 122 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 DEGS1O15121 323 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 SPINT2O43291 252 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 TBX19O60806 448 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 OPN1MWP04001 364 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 OPN1MW2P0DN77 364 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 OPN1MW3P0DN78 364 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 TNFSF4P23510 183 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 CYB561P49447 251 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 HLA-DRB3P79483 266 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 PMP22Q01453 160 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 PRAMEF5Q5TYX0 476 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 PRAMEF6Q5VXH4 476 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 LINC00696Q6ZRV3 163 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 Q6ZS52 159 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 SYT13Q7L8C5 426 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 WDR34Q96EX3 536 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 CHRDL1Q9BU40 450 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 PLA2G2FQ9BZM2 168 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 CRISPLD2Q9H0B8 497 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 TXNIPQ9H3M7 391 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 ING1Q9UK53 422 aaPredicted RBP10.33□□□□□ -0.76
VPS39-201ENST00000318006 ZFPL1O95159 310 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 YBX1P67809 324 aaKnown RBP10.33□□□□□ -0.76
VPS39-201ENST00000318006 IRF3Q14653 427 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 ZNF813Q6ZN06 617 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 C19orf35Q6ZS72 473 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 OR8B4Q96RC9 309 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 FAM173AQ9BQD7 235 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 SIRT3Q9NTG7 399 aaPredicted RBP10.33□□□□□ -0.76
VPS39-201ENST00000318006 FBXL17Q9UF56 701 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 SIGLEC7Q9Y286 467 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 SSUH2Q9Y2M2 353 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 GREB1LQ9C091 1923 aaPredicted RBP10.33□□□□□ -0.76
VPS39-201ENST00000318006 ZNF814B7Z6K7 855 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 IGF2P01344 180 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 PNRC1Q12796 327 aaPredicted RBP10.33□□□□□ -0.76
VPS39-201ENST00000318006 KMT5CQ86Y97 462 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 LINC00518Q8N0U6 118 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 LIN7CQ9NUP9 197 aaKnown RBP10.33□□□□□ -0.76
VPS39-201ENST00000318006 COL11A1P12107 1806 aaPredicted RBP10.33□□□□□ -0.76
VPS39-201ENST00000318006 DVL1O14640 695 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 Q7L0L9 218 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 IFI44Q8TCB0 444 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 TAAR9Q96RI9 348 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 ANKRD10Q9NXR5 420 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 FER1L6Q2WGJ9 1857 aa10.33□□□□□ -0.76
VPS39-201ENST00000318006 A0A1W2PNV4 684 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 FAM221AA4D161 298 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 WDR1O75083 606 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 ICOSLGO75144 302 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 GP1BAP07359 652 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 THEM4Q5T1C6 240 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 ZNF793Q6ZN11 406 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 LHFPL2Q6ZUX7 228 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 C17orf47Q8NEP4 570 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 NUBPLQ8TB37 319 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 LRRC61Q9BV99 259 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 GPR160Q9UJ42 338 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 B9D1Q9UPM9 204 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 GUSBP08236 651 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 FAHD2BQ6P2I3 314 aaPredicted RBP10.32□□□□□ -0.76
VPS39-201ENST00000318006 ZNF547Q8IVP9 402 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 LINC01555Q8NAE3 123 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 OR52N4Q8NGI2 321 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 MARVELD3Q96A59 401 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 FAHD2AQ96GK7 314 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 TMED3Q9Y3Q3 217 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 LTBP1Q14766 1721 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 TMEM272A0A1B0GTI8 110 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 ZNF732B4DXR9 585 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 SULT1A1P50225 295 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 MAML2Q8IZL2 1156 aaPredicted RBP10.32□□□□□ -0.76
VPS39-201ENST00000318006 EFSO43281 561 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 SLC25A6P12236 298 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 DRD3P35462 400 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 FAM109BQ6ICB4 259 aaPredicted RBP10.32□□□□□ -0.76
VPS39-201ENST00000318006 KIRREL2Q6UWL6 708 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 OTOSQ8NHW6 89 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 B3GAT1Q9P2W7 334 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 PPP1R3CQ9UQK1 317 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 KCNE3Q9Y6H6 103 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 TRIP11Q15643 1979 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 CACNA1CQ13936 2221 aa10.32□□□□□ -0.76
VPS39-201ENST00000318006 AQP7O14520 342 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 PRKNO60260 465 aaPredicted RBP10.31□□□□□ -0.76
VPS39-201ENST00000318006 DAOP14920 347 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 PNLIPRP2P54317 469 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 CHAC2Q8WUX2 184 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 ST8SIA1Q92185 356 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms