RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 R3HDM4Q96D70 268 aa13.36□□□□□ -0.27
CLN3-264ENST00000637985 SP140LQ9H930 580 aa13.36□□□□□ -0.27
CLN3-264ENST00000637985 FN3KRPQ9HA64 309 aa13.36□□□□□ -0.27
CLN3-264ENST00000637985 DHRS12A0PJE2 317 aa13.35□□□□□ -0.27
CLN3-264ENST00000637985 XRCC2O43543 280 aa13.35□□□□□ -0.27
CLN3-264ENST00000637985 PTBP3O95758 552 aaKnown RBP13.35□□□□□ -0.27
CLN3-264ENST00000637985 APOC1P02654 83 aa13.35□□□□□ -0.27
CLN3-264ENST00000637985 DDOSTP39656 456 aa13.35□□□□□ -0.27
CLN3-264ENST00000637985 TRPM8Q7Z2W7 1104 aa13.35□□□□□ -0.27
CLN3-264ENST00000637985 OR2AE1Q8NHA4 323 aa13.35□□□□□ -0.27
CLN3-264ENST00000637985 CANT1Q8WVQ1 401 aa13.35□□□□□ -0.27
CLN3-264ENST00000637985 SPSB4Q96A44 273 aa13.35□□□□□ -0.27
CLN3-264ENST00000637985 INTS14Q96SY0 518 aa13.35□□□□□ -0.27
CLN3-264ENST00000637985 ADAT1Q9BUB4 502 aaKnown RBP13.35□□□□□ -0.27
CLN3-264ENST00000637985 YY1AP1Q9H869 796 aa13.35□□□□□ -0.27
CLN3-264ENST00000637985 SMURF1Q9HCE7 757 aa13.35□□□□□ -0.27
CLN3-264ENST00000637985 DNAH1Q9P2D7 4330 aa13.35□□□□□ -0.27
CLN3-264ENST00000637985 ADARB2-AS1A8MUL3 147 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 C3orf84H3BNL1 204 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 FAM20BO75063 409 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 GLCEO94923 617 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 VSIG10L2P0DP72 767 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 PAICSP22234 425 aaKnown RBP13.34□□□□□ -0.27
CLN3-264ENST00000637985 HSD11B1P28845 292 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 GSTT1P30711 240 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 MZT1Q08AG7 82 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 EIF2B1Q14232 305 aaKnown RBP13.34□□□□□ -0.27
CLN3-264ENST00000637985 KCNJ8Q15842 424 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 DNAL1Q4LDG9 190 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 METAP1DQ6UB28 335 aaPredicted RBP13.34□□□□□ -0.27
CLN3-264ENST00000637985 SHFQ7M4L6 423 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 DPY19L4Q7Z388 723 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 VMO1Q7Z5L0 202 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 NDUFA11Q86Y39 141 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 ERI1Q8IV48 349 aaKnown RBP13.34□□□□□ -0.27
CLN3-264ENST00000637985 OR4C13Q8NGP0 309 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 OR2T6Q8NHC8 308 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 RNF133Q8WVZ7 376 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 MMADHCQ9H3L0 296 aaPredicted RBP13.34□□□□□ -0.27
CLN3-264ENST00000637985 ZNF556Q9HAH1 456 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 RNF7Q9UBF6 113 aa13.34□□□□□ -0.27
CLN3-264ENST00000637985 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.33□□□□□ -0.28
CLN3-264ENST00000637985 A0A1B0GVI7 797 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 FAM183AA6NL82 134 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 GYG2O15488 501 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 SLC2A1P11166 492 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 CX3CR1P49238 355 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 KRTAP10-11P60412 298 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 MPPED2Q15777 294 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 CDONQ4KMG0 1287 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 PRAMEF6Q5VXH4 476 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 TMEM179BQ7Z7N9 219 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 IQCF1Q8N6M8 205 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 OR6N2Q8NGY6 317 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 BCAS4Q8TDM0 211 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 OTULINQ96BN8 352 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 MED20Q9H944 212 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 TRIM36Q9NQ86 728 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 UFSP2Q9NUQ7 469 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 N6AMT1Q9Y5N5 214 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 KPTNQ9Y664 436 aa13.33□□□□□ -0.28
CLN3-264ENST00000637985 PRR23D1E9PI22 279 aaPredicted RBP13.32□□□□□ -0.28
CLN3-264ENST00000637985 FBXO24O75426 580 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 E2F6O75461 281 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 FCN3O75636 299 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 HMGN1P05114 100 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 ANXA2P07355 339 aaKnown RBP13.32□□□□□ -0.28
CLN3-264ENST00000637985 PRR23D2P0DMB1 279 aaPredicted RBP13.32□□□□□ -0.28
CLN3-264ENST00000637985 CD28P10747 220 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 OSMP13725 252 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 ANXA8P13928 327 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 CD33P20138 364 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 ANOS1P23352 680 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 CFL1P23528 166 aaKnown RBP13.32□□□□□ -0.28
CLN3-264ENST00000637985 POU1F1P28069 291 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 HOXA4Q00056 320 aaPredicted RBP13.32□□□□□ -0.28
CLN3-264ENST00000637985 FLOT2Q14254 428 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 GINS1Q14691 196 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 C11orf91Q3C1V1 193 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 BTN2A1Q7KYR7 527 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 TIGD4Q8IY51 512 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 OR56B2PQ8NGI1 322 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 OR52H1Q8NGJ2 320 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 ABHD6Q9BV23 337 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 RANBP3Q9H6Z4 567 aaPredicted RBP13.32□□□□□ -0.28
CLN3-264ENST00000637985 CNTD2Q9H8S5 307 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 C14orf119Q9NWQ9 140 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 MAB21L2Q9Y586 359 aa13.32□□□□□ -0.28
CLN3-264ENST00000637985 ANKRD30BLA7E2S9 258 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 LGALS8O00214 317 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 TBX1O43435 398 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 ADAM20O43506 726 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 NDUFA2O43678 99 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 FAM3AP98173 230 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 CDK5Q00535 292 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 DOC2BQ14184 412 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 TIGD6Q17RP2 521 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 ZBTB37Q5TC79 503 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 SLC16A9Q7RTY1 509 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 PRSS45Q7RTY3 260 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms