RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 TIMM50Q3ZCQ8 353 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 KLHL12Q53G59 568 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 SPANXN2Q5MJ10 180 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 PRAMEF6Q5VXH4 476 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 RUSC1-AS1Q66K80 236 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 SMARCD3Q6STE5 483 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 LYPD4Q6UWN0 246 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 LRRN1Q6UXK5 716 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 TREML4Q6UXN2 200 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 RBMS3Q6XE24 437 aaKnown RBP5.58□□□□□ -1.52
VPS53-213ENST00000572334 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.58□□□□□ -1.52
VPS53-213ENST00000572334 CELF2-AS1Q8N7Q2 184 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 POC5Q8NA72 575 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 OR6Q1Q8NGQ2 317 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 OR4K13Q8NH42 304 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 OR52J3Q8NH60 311 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 FAM162AQ96A26 154 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 SLC25A28Q96A46 364 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 NEIL1Q96FI4 390 aaPredicted RBP5.58□□□□□ -1.52
VPS53-213ENST00000572334 ZNF582Q96NG8 517 aaPredicted RBP5.58□□□□□ -1.52
VPS53-213ENST00000572334 ERMAPQ96PL5 475 aaPredicted RBP5.58□□□□□ -1.52
VPS53-213ENST00000572334 TBX15Q96SF7 602 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 CIB1Q99828 191 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 NUDT16L1Q9BRJ7 211 aaKnown RBP5.58□□□□□ -1.52
VPS53-213ENST00000572334 MS4A7Q9GZW8 240 aaPredicted RBP5.58□□□□□ -1.52
VPS53-213ENST00000572334 SLITRK2Q9H156 845 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 OR52D1Q9H346 318 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 FN3KQ9H479 309 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 SRA1Q9HD15 236 aaKnown RBP5.58□□□□□ -1.52
VPS53-213ENST00000572334 USE1Q9NZ43 259 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 ACTR3BQ9P1U1 418 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 MIOXQ9UGB7 285 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 TMCC3Q9ULS5 477 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 RBMX2Q9Y388 322 aaKnown RBP5.58□□□□□ -1.52
VPS53-213ENST00000572334 MMP24Q9Y5R2 645 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 SESN1Q9Y6P5 492 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 DSCAML1Q8TD84 2053 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 PLXNB1O43157 2135 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 CENPVL3A0A0U1RRI6 287 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 FAM181BA6NEQ2 426 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 HMX3A6NHT5 357 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 POM121CA8CG34 1229 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 SRRM5B3KS81 715 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 F5H5K5 113 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 CCRL2O00421 344 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 PHYHO14832 338 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 GSTA4O15217 222 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 HSD17B1P14061 328 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 FPR3P25089 353 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 CRABP1P29762 137 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 OTX1P32242 354 aaPredicted RBP5.57□□□□□ -1.52
VPS53-213ENST00000572334 OR3A3P47888 321 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 CXCR4P61073 352 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 ZNF92Q03936 586 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 NEDD8Q15843 81 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 CCDC58Q4VC31 144 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 PDLIM3Q53GG5 364 aaPredicted RBP5.57□□□□□ -1.52
VPS53-213ENST00000572334 GLYATQ6IB77 296 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 BTNL3Q6UXE8 466 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 Q6YL49 198 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 RHOUQ7L0Q8 258 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 RRM2BQ7LG56 351 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 CYP4Z1Q86W10 505 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 C11orf53Q8IXP5 236 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 FGFRL1Q8N441 504 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 RNF148Q8N7C7 305 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 SDR9C7Q8NEX9 313 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 OR8B3Q8NGG8 313 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 OR5L1Q8NGL2 311 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 OR2AE1Q8NHA4 323 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 LHFPL5Q8TAF8 219 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 WFDC12Q8WWY7 111 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 LRTOMTQ8WZ04 291 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 SLCO4A1Q96BD0 722 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 OR8B2Q96RD0 313 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 KCTD14Q9BQ13 255 aaPredicted RBP5.57□□□□□ -1.52
VPS53-213ENST00000572334 NIPAL2Q9H841 368 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 GORASP2Q9H8Y8 452 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 ZNF556Q9HAH1 456 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 SMURF1Q9HCE7 757 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 UFSP2Q9NUQ7 469 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 TMEM100Q9NV29 134 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 ING3Q9NXR8 418 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 C1RLQ9NZP8 487 aa5.57□□□□□ -1.52
VPS53-213ENST00000572334 PDP1Q9P0J1 537 aaPredicted RBP5.57□□□□□ -1.52
VPS53-213ENST00000572334 NOTCH3Q9UM47 2321 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 A0A1B0GW55 424 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 CD300LBA8K4G0 201 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 C3orf80F5H4A9 247 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 BHLHE40O14503 412 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 LHBP01229 141 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 MELTFP08582 738 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 DUX4L2P0CJ85 424 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 DUX4L3P0CJ86 424 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 DUX4L4P0CJ87 422 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 DUX4L5P0CJ88 424 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 DUX4L6P0CJ89 424 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 DUX4L7P0CJ90 424 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 IL7P13232 177 aa5.56□□□□□ -1.52
VPS53-213ENST00000572334 CA6P23280 308 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms