RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 OR6K3Q8NGY3 331 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 CITED4Q96RK1 184 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 EGLN1Q9GZT9 426 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 ZCCHC4Q9H5U6 513 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 FGF20Q9NP95 211 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-209ENST00000560637 PLCXD1Q9NUJ7 323 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 GSKIPQ9P0R6 139 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 DOPEY1Q5JWR5 2465 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 LYNX1G3V0Z9 82 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 M0QYG6 137 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 M0R233 179 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 LY6HO94772 140 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 LYPD3O95274 346 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 TP53P04637 393 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-209ENST00000560637 LYNX1P0DP58 116 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 ACHEP22303 614 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 FAUP35544 74 aaKnown RBP4.74□□□□□ -1.65
VPS13C-209ENST00000560637 OR3A4PP47883 348 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 AP2S1P53680 142 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-209ENST00000560637 TNFAIP6P98066 277 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-209ENST00000560637 PRB3Q04118 309 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-209ENST00000560637 RNASE10Q5GAN6 216 aaKnown RBP4.74□□□□□ -1.65
VPS13C-209ENST00000560637 DRAM2Q6UX65 266 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 Q6ZTK2 550 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 OR5H6Q8NGV6 325 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 OR4K15Q8NH41 348 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 FCAMRQ8WWV6 532 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 BORCS5Q969J3 196 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 ADAT3Q96EY9 351 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-209ENST00000560637 SORCS2Q96PQ0 1159 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 SPRY4Q9C004 299 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 OR10A4Q9H209 315 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF175Q9Y473 711 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 PMF1-BGLAPU3KQ54 211 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 MEIKINA0A087WXM9 373 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 B4DXG7 233 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 NPIPB7O75200 414 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF254O75437 659 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 SULT1C4O75897 302 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 ECDO95905 644 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-209ENST00000560637 GNB3P16520 340 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 PI3P19957 117 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 GRNP28799 593 aaKnown RBP4.74□□□□□ -1.65
VPS13C-209ENST00000560637 CDKN1AP38936 164 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 SRP9P49458 86 aaKnown RBP4.74□□□□□ -1.65
VPS13C-209ENST00000560637 RPS23P62266 143 aaKnown RBP4.74□□□□□ -1.65
VPS13C-209ENST00000560637 OR2B11Q5JQS5 317 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 LINC01590Q5TEZ4 76 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 CDC20BQ86Y33 519 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 ANKRD13BQ86YJ7 626 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 FAM185AQ8N0U4 392 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 SYS1Q8N2H4 156 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 OR1K1Q8NGR3 316 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF519Q8TB69 540 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 ST8SIA4Q92187 359 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 RAB3CQ96E17 227 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 TRMT61AQ96FX7 289 aaKnown RBP4.74□□□□□ -1.65
VPS13C-209ENST00000560637 RTL8AQ9BWD3 113 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 PPA2Q9H2U2 334 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 MMP27Q9H306 513 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 C1orf123Q9NWV4 160 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 NUP50Q9UKX7 468 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 ST3GAL6Q9Y274 331 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 MALRD1Q5VYJ5 2156 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 A0A0G2JMP0 313 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 A0A0G2JNJ9 132 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 A0A0X1KG70 313 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF816-ZNF321PA0A0X1KG74 233 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 C5orf51A6NDU8 294 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF716A6NP11 495 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 MCRIP1C9JLW8 97 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 DEGS1O15121 323 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 XRCC2O43543 280 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 TOXO94900 526 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 MT-ND4P03905 459 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 ADRA2AP08913 450 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 CECR9P0C854 216 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 PRKACBP22694 351 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 KIR2DL2P43627 348 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-209ENST00000560637 GSK3AP49840 483 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF81P51508 661 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 KISS1Q15726 138 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 C2orf76Q3KRA6 126 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF362Q5T0B9 420 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-209ENST00000560637 FAM27BQ5VT28 67 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 UBE2UQ5VVX9 321 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 FOXB2Q5VYV0 432 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 LAIR2Q6ISS4 152 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 SLC25A24Q6NUK1 477 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 SLC25A47Q6Q0C1 308 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 Q6ZT83 130 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 GDPD3Q7L5L3 318 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 ZIC4Q8N9L1 334 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 OR4M2Q8NGB6 313 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 ASB5Q8WWX0 329 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 DYRK2Q92630 601 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 SEH1LQ96EE3 360 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 EAF1Q96JC9 268 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-209ENST00000560637 MNTQ99583 582 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF426Q9BUY5 554 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms