RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-222	ENST00000555774	ANGPTL4	Q9BY76	406 aa		11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774	TMEM100	Q9NV29	134 aa		11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774		A0A1W2PP11	408 aa		11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774	SIGLEC6	O43699	453 aa		11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774	MTRF1	O75570	445 aa	Known RBP	11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774	CPT2	P23786	658 aa		11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774	OTX1	P32242	354 aa	Predicted RBP	11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774	SUCLG1	P53597	346 aa	Known RBP	11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774	DSCR4	P56555	118 aa	Predicted RBP	11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774	MC2R	Q01718	297 aa		11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774	ENDOG	Q14249	297 aa	Known RBP	11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774	BAP18	Q8IXM2	172 aa		11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774	EMG1	Q92979	244 aa	Known RBP	11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774	NTNG2	Q96CW9	530 aa		11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774	LRRC46	Q96FV0	321 aa		11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774	PECR	Q9BY49	303 aa		11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774	DNAJB11	Q9UBS4	358 aa		11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774	PCDHB10	Q9UN67	800 aa		11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774	PCDHGA1	Q9Y5H4	931 aa		11.86	□□□□□ -0.51
SHMT2-222	ENST00000555774	ANOS1	P23352	680 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	SLC6A9	P48067	706 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	SNU13	P55769	128 aa	Known RBP	11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	CSNK2A1	P68400	391 aa	Predicted RBP	11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	IL11RA	Q14626	422 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	STK11	Q15831	433 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	PRAMEF20	Q5VT98	475 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	AADACL3	Q5VUY0	350 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	CRIP3	Q6Q6R5	217 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	CSNK2A3	Q8NEV1	391 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	RNF141	Q8WVD5	230 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	HAS2	Q92819	552 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	NABP1	Q96AH0	204 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	AQP10	Q96PS8	301 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	S100A13	Q99584	98 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	AIFM2	Q9BRQ8	373 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	ZNF700	Q9H0M5	742 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	SLC6A15	Q9H2J7	730 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	MEMO1	Q9Y316	297 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	UNC13C	Q8NB66	2214 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	IGHV1-45	A0A0A0MS14	117 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	DHRS7C	A6NNS2	312 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	NPIPA2	E9PIF3	369 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	NPIPA3	F8WFD2	350 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	TOR1A	O14656	332 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	RRP8	O43159	456 aa	Known RBP	11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	DHH	O43323	396 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	KLK2	P20151	261 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	DHPS	P49366	369 aa	Predicted RBP	11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	SUPT4H1	P63272	117 aa	Known RBP	11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	TMEM123	Q8N131	208 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	OR5T2	Q8NGG2	359 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	M1AP	Q8TC57	530 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	SPTSSA	Q969W0	71 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	C2orf50	Q96LR7	162 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	CYTL1	Q9NRR1	136 aa		11.85	□□□□□ -0.51
SHMT2-222	ENST00000555774	ASXL3	Q9C0F0	2248 aa		11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774		E9PLN8	166 aa		11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774	STMND1	H3BQB6	276 aa		11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774	DNASE2	O00115	360 aa	Predicted RBP	11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774	HPN	P05981	417 aa		11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774	CD79A	P11912	226 aa		11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774	LIF	P15018	202 aa		11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774	BLVRB	P30043	206 aa	Predicted RBP	11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774	ZNF84	P51523	738 aa		11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774	EIF5A	P63241	154 aa	Known RBP	11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774	AIMP2	Q13155	320 aa	Known RBP	11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774	SLC9A3R2	Q15599	337 aa		11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774	UNQ6126/PRO20091	Q6UXV3	157 aa		11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774	OR1S2	Q8NGQ3	325 aa		11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774	ARL11	Q969Q4	196 aa		11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774	CPNE2	Q96FN4	548 aa	Predicted RBP	11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774	ASF1B	Q9NVP2	202 aa		11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774	EHF	Q9NZC4	300 aa		11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774	ABCA7	Q8IZY2	2146 aa		11.84	□□□□□ -0.51
SHMT2-222	ENST00000555774		H0YIZ8	118 aa		11.83	□□□□□ -0.51
SHMT2-222	ENST00000555774	YKT6	O15498	198 aa		11.83	□□□□□ -0.51
SHMT2-222	ENST00000555774	DNPH1	O43598	174 aa		11.83	□□□□□ -0.51
SHMT2-222	ENST00000555774	DEFA5	Q01523	94 aa		11.83	□□□□□ -0.51
SHMT2-222	ENST00000555774	UBE2V2	Q15819	145 aa		11.83	□□□□□ -0.51
SHMT2-222	ENST00000555774	CHRFAM7A	Q494W8	412 aa		11.83	□□□□□ -0.51
SHMT2-222	ENST00000555774	DRAM2	Q6UX65	266 aa		11.83	□□□□□ -0.51
SHMT2-222	ENST00000555774	POC1A	Q8NBT0	407 aa		11.83	□□□□□ -0.51
SHMT2-222	ENST00000555774	OR9K2	Q8NGE7	335 aa		11.83	□□□□□ -0.51
SHMT2-222	ENST00000555774	PAQR8	Q8TEZ7	354 aa		11.83	□□□□□ -0.51
SHMT2-222	ENST00000555774	LIN37	Q96GY3	246 aa	Predicted RBP	11.83	□□□□□ -0.51
SHMT2-222	ENST00000555774	IMMP1L	Q96LU5	166 aa		11.83	□□□□□ -0.51
SHMT2-222	ENST00000555774	ST6GALNAC5	Q9BVH7	336 aa		11.83	□□□□□ -0.51
SHMT2-222	ENST00000555774	NKX6-2	Q9C056	277 aa	Predicted RBP	11.83	□□□□□ -0.51
SHMT2-222	ENST00000555774	OCIAD1	Q9NX40	245 aa		11.83	□□□□□ -0.51
SHMT2-222	ENST00000555774	FOXD3	Q9UJU5	478 aa	Predicted RBP	11.83	□□□□□ -0.51
SHMT2-222	ENST00000555774	C14orf166	Q9Y224	244 aa	Known RBP	11.83	□□□□□ -0.51
SHMT2-222	ENST00000555774	CEP290	O15078	2479 aa		11.83	□□□□□ -0.52
SHMT2-222	ENST00000555774	PHF3	Q92576	2039 aa	Known RBP	11.83	□□□□□ -0.52
SHMT2-222	ENST00000555774	TMEM265	A0A087WTH1	108 aa		11.83	□□□□□ -0.52
SHMT2-222	ENST00000555774	TMEM218	A2RU14	115 aa		11.83	□□□□□ -0.52
SHMT2-222	ENST00000555774	GJE1	A6NN92	205 aa		11.83	□□□□□ -0.52
SHMT2-222	ENST00000555774		F5H5K5	113 aa		11.83	□□□□□ -0.52
SHMT2-222	ENST00000555774		M0R135	149 aa		11.83	□□□□□ -0.52
SHMT2-222	ENST00000555774	CD63	P08962	238 aa		11.83	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms