RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 HCCSP53701 268 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 BPIFB3P59826 476 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 PRDX4Q13162 271 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 GFOD2Q3B7J2 385 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 ZNF322Q6U7Q0 402 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 DOK3Q7L591 496 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 SLC35F2Q8IXU6 374 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 ZDHHC23Q8IYP9 409 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 OR8J1Q8NGP2 316 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 HPSE2Q8WWQ2 592 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 PKP2Q99959 881 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 NUDT16L1Q9BRJ7 211 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 PBOV1Q9GZY1 135 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 DNTTIP1Q9H147 329 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 USE1Q9NZ43 259 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 C22orf46C9J442 243 aa13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 E9PQ18 207 aa13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 C3orf80F5H4A9 247 aa13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 H3BNX3 289 aa13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 GPR37O15354 613 aa13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 ECDO95905 644 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 ALPLP05186 524 aa13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 EGR1P18146 543 aa13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 CSNK2BP67870 215 aa13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 MICBQ29980 383 aa13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 ATPAF1Q5TC12 328 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 SFRP4Q6FHJ7 346 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 CCDC121Q6ZUS5 278 aa13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 BCDIN3DQ7Z5W3 292 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 C10orf67Q8IYJ2 551 aa13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 C19orf18Q8NEA5 215 aa13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 LRRC29Q8WV35 223 aa13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 TRUB1Q8WWH5 349 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 IL4I1Q96RQ9 567 aa13.33□□□□□ -0.28
CCDC88C-209ENST00000554872 OR5B21A6NL26 309 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 ZNF850A8MQ14 1090 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 ZNF670-ZNF695F2Z2N8 137 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 M0R129 80 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 ADAM20O43506 726 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 CXCR4P61073 352 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 HOXA4Q00056 320 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 CEACAM21Q3KPI0 293 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 SLC25A30Q5SVS4 291 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 ZDHHC22Q8N966 263 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 FAM81AQ8TBF8 368 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 PYDC1Q8WXC3 89 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 RFKQ969G6 155 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 FGF23Q9GZV9 251 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 SEMA6AQ9H2E6 1030 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 PPP1R3EQ9H7J1 279 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 SMURF1Q9HCE7 757 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 ESM1Q9NQ30 184 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 ZNF69Q9UC07 566 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 IKZF2Q9UKS7 526 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 R4GMQ9 66 aa13.32□□□□□ -0.28
CCDC88C-209ENST00000554872 TENM1Q9UKZ4 2725 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 LOC110117498-PIK3R3F6TDL0 507 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 CLDN34H7C241 214 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 CDIPTO14735 213 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 MTRF1O75570 445 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 DHRS3O75911 302 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 GYPAP02724 150 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 TTRP02766 147 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 OR2T7P0C7T2 308 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 POLR2IP36954 125 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 CDC42P60953 191 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 GNG3P63215 75 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 RIPPLY1Q0D2K3 151 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 KPNB1Q14974 876 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 ZNF684Q5T5D7 378 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 TMEM42Q69YG0 159 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 STUMQ69YW2 141 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 ELMOD2Q8IZ81 293 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 PNLDC1Q8NA58 520 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 OR5A2Q8NGI9 324 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 OR2T27Q8NH04 317 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 OR51E1Q8TCB6 317 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 HRASLS5Q96KN8 279 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 TECTBQ96PL2 329 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 PRDM13Q9H4Q3 707 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 GPR84Q9NQS5 396 aa13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 MRM2Q9UI43 246 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-209ENST00000554872 TMEM89A2RUT3 159 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 ZNF879B4DU55 563 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 PSMD9O00233 223 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 FCN3O75636 299 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 SULT1C4O75897 302 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 MMP9P14780 707 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 CCL1P22362 96 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 TGM4P49221 684 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 UBA52P62987 128 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 MFGE8Q08431 387 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 WDR38Q5JTN6 314 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 RBMS3Q6XE24 437 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 SLC36A1Q7Z2H8 476 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 BOLLQ8N9W6 283 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 SCCPDHQ8NBX0 429 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 OR51G2Q8NGK0 314 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 PIGCQ92535 297 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms