RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 NKX2-5P52952 324 aaPredicted RBP22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 ZNF92Q03936 586 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 MAB21L1Q13394 359 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 RBMS2Q15434 407 aaKnown RBP22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 OR8B8Q15620 311 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 ZBTB37Q5TC79 503 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 TNFAIP8L1Q8WVP5 186 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 ZCCHC14Q8WYQ9 949 aaKnown RBP22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 CMBLQ96DG6 245 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 BEX2Q9BXY8 128 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 C12orf49Q9H741 205 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 ZMAT3Q9HA38 289 aaKnown RBP22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 ING4Q9UNL4 249 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 LOC100509620A0A075B734 347 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 ARPC1BO15143 372 aaKnown RBP22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 CRTAPO75718 401 aaPredicted RBP22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 GSTP1P09211 210 aaKnown RBP22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 FJX1Q86VR8 437 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 KDF1Q8NAX2 398 aaPredicted RBP22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 OR56B1Q8NGI3 324 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 OR1K1Q8NGR3 316 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 PIGTQ969N2 578 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 SARAFQ96BY9 339 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 MED30Q96HR3 178 aa22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 ELF5Q9UKW6 265 aaPredicted RBP22.87■■□□□ 1.25
CCDC88C-205ENST00000553403 A0A0A6YYD4 124 aa22.86■■□□□ 1.25
CCDC88C-205ENST00000553403 CYB5AP00167 134 aa22.86■■□□□ 1.25
CCDC88C-205ENST00000553403 CD74P04233 296 aa22.86■■□□□ 1.25
CCDC88C-205ENST00000553403 CD79AP11912 226 aa22.86■■□□□ 1.25
CCDC88C-205ENST00000553403 FCN2Q15485 313 aa22.86■■□□□ 1.25
CCDC88C-205ENST00000553403 METTL11BQ5VVY1 283 aa22.86■■□□□ 1.25
CCDC88C-205ENST00000553403 ZNF584Q8IVC4 421 aa22.86■■□□□ 1.25
CCDC88C-205ENST00000553403 FAM89BQ8N5H3 189 aa22.86■■□□□ 1.25
CCDC88C-205ENST00000553403 BCL2L2Q92843 193 aaPredicted RBP22.86■■□□□ 1.25
CCDC88C-205ENST00000553403 ZNF486Q96H40 463 aaPredicted RBP22.86■■□□□ 1.25
CCDC88C-205ENST00000553403 NICN1Q9BSH3 213 aa22.86■■□□□ 1.25
CCDC88C-205ENST00000553403 TRAF4Q9BUZ4 470 aaPredicted RBP22.86■■□□□ 1.25
CCDC88C-205ENST00000553403 SELENOIQ9C0D9 397 aa22.86■■□□□ 1.25
CCDC88C-205ENST00000553403 PLSCR2Q9NRY7 297 aa22.86■■□□□ 1.25
CCDC88C-205ENST00000553403 RAB3DO95716 219 aa22.85■■□□□ 1.25
CCDC88C-205ENST00000553403 IL18BPO95998 194 aa22.85■■□□□ 1.25
CCDC88C-205ENST00000553403 IL5P05113 134 aa22.85■■□□□ 1.25
CCDC88C-205ENST00000553403 RAB1AP62820 205 aa22.85■■□□□ 1.25
CCDC88C-205ENST00000553403 RPS27AP62979 156 aaKnown RBP22.85■■□□□ 1.25
CCDC88C-205ENST00000553403 ZNF169Q14929 603 aaPredicted RBP22.85■■□□□ 1.25
CCDC88C-205ENST00000553403 SLC22A6Q4U2R8 563 aa22.85■■□□□ 1.25
CCDC88C-205ENST00000553403 NOXA1Q86UR1 476 aa22.85■■□□□ 1.25
CCDC88C-205ENST00000553403 STEAP2Q8NFT2 490 aa22.85■■□□□ 1.25
CCDC88C-205ENST00000553403 OR4D10Q8NGI6 311 aa22.85■■□□□ 1.25
CCDC88C-205ENST00000553403 TECTBQ96PL2 329 aa22.85■■□□□ 1.25
CCDC88C-205ENST00000553403 S100A13Q99584 98 aa22.85■■□□□ 1.25
CCDC88C-205ENST00000553403 BANF2Q9H503 90 aa22.85■■□□□ 1.25
CCDC88C-205ENST00000553403 FRYQ5TBA9 3013 aa22.85■■□□□ 1.25
CCDC88C-205ENST00000553403 ZP1P60852 638 aa22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 PLP2Q04941 152 aa22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 LHFPL2Q6ZUX7 228 aa22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 C1QL2Q7Z5L3 287 aa22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 TRAPPC6BQ86SZ2 158 aa22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 LIX1LQ8IVB5 337 aa22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 OR8S1Q8NH09 359 aa22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 NANOS1Q8WY41 292 aaKnown RBP22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 NPDC1Q9NQX5 325 aaPredicted RBP22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 ZNF503-AS2A6NEH8 195 aa22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 ZNF736B4DX44 427 aaPredicted RBP22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 NRASP01111 189 aa22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 GNB3P16520 340 aa22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 MTCP1P56278 107 aa22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 PNLIPRP3Q17RR3 467 aa22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 DMRTC1Q5HYR2 192 aa22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 OR5D18Q8NGL1 313 aa22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 DVL3Q92997 716 aaPredicted RBP22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 RAB3CQ96E17 227 aa22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 TM2D1Q9BX74 207 aa22.84■■□□□ 1.25
CCDC88C-205ENST00000553403 CACNA1BQ00975 2339 aa22.83■■□□□ 1.25
CCDC88C-205ENST00000553403 ZNF816-ZNF321PA0A0X1KG74 233 aa22.83■■□□□ 1.24
CCDC88C-205ENST00000553403 A0A1W2PP11 408 aa22.83■■□□□ 1.24
CCDC88C-205ENST00000553403 KLK10O43240 276 aa22.83■■□□□ 1.24
CCDC88C-205ENST00000553403 HIST1H1DP16402 221 aaKnown RBP22.83■■□□□ 1.24
CCDC88C-205ENST00000553403 GLDNQ6ZMI3 551 aaPredicted RBP22.83■■□□□ 1.24
CCDC88C-205ENST00000553403 OR51S1Q8NGJ8 323 aa22.83■■□□□ 1.24
CCDC88C-205ENST00000553403 APOBEC3DQ96AK3 386 aaPredicted RBP22.83■■□□□ 1.24
CCDC88C-205ENST00000553403 POM121L2Q96KW2 1035 aa22.83■■□□□ 1.24
CCDC88C-205ENST00000553403 TRIB1Q96RU8 372 aa22.83■■□□□ 1.24
CCDC88C-205ENST00000553403 GINS4Q9BRT9 223 aa22.83■■□□□ 1.24
CCDC88C-205ENST00000553403 ARHGAP21Q5T5U3 1957 aa22.83■■□□□ 1.24
CCDC88C-205ENST00000553403 FREM2Q5SZK8 3169 aa22.82■■□□□ 1.24
CCDC88C-205ENST00000553403 C5orf49A4QMS7 147 aa22.82■■□□□ 1.24
CCDC88C-205ENST00000553403 SOCS1O15524 211 aa22.82■■□□□ 1.24
CCDC88C-205ENST00000553403 SERPINA5P05154 406 aa22.82■■□□□ 1.24
CCDC88C-205ENST00000553403 MEF2DQ14814 521 aa22.82■■□□□ 1.24
CCDC88C-205ENST00000553403 GUSBP1Q15486 140 aa22.82■■□□□ 1.24
CCDC88C-205ENST00000553403 DACT3Q96B18 629 aaPredicted RBP22.82■■□□□ 1.24
CCDC88C-205ENST00000553403 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP22.82■■□□□ 1.24
CCDC88C-205ENST00000553403 KCNN3Q9UGI6 736 aa22.82■■□□□ 1.24
CCDC88C-205ENST00000553403 AKAP13Q12802 2813 aa22.82■■□□□ 1.24
CCDC88C-205ENST00000553403 C1QBP02746 253 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 MGMTP16455 207 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 RBP2P50120 134 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 TMEM50BP56557 158 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 PIAS4Q8N2W9 510 aaPredicted RBP22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms