RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 SMN1Q16637 294 aaKnown RBP10.86□□□□□ -0.67
VPS28-216ENST00000533806 CR1LQ2VPA4 569 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 TP53I3Q53FA7 332 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 BCL2L15Q5TBC7 163 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 TTC23Q5W5X9 447 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 GLCCI1Q86VQ1 547 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 MUC20Q8N307 709 aaPredicted RBP10.86□□□□□ -0.67
VPS28-216ENST00000533806 KLHL36Q8N4N3 616 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 ZNF555Q8NEP9 628 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 OR11L1Q8NGX0 322 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 OR8S1Q8NH09 359 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 JAM3Q9BX67 310 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 RNPEPL1Q9HAU8 725 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 ABCB9Q9NP78 766 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 ACOXLQ9NUZ1 547 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 C1orf123Q9NWV4 160 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 UBAP1Q9NZ09 502 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 LPAR3Q9UBY5 353 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 PPIAL4AQ9Y536 164 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 PPIAL4CA0A0B4J2A2 164 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 DAPL1A0PJW8 107 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 KIAA1324LA8MWY0 1029 aaPredicted RBP10.85□□□□□ -0.67
VPS28-216ENST00000533806 A8MXK9 166 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.85□□□□□ -0.67
VPS28-216ENST00000533806 P2RY10O00398 339 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 PSMB10P40306 273 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 KIR3DL2P43630 455 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 OR12D2P58182 307 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 SEC61A1P61619 476 aaKnown RBP10.85□□□□□ -0.67
VPS28-216ENST00000533806 CSNK2BP67870 215 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 PAX2Q02962 417 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 SLC34A1Q06495 639 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 RIPPLY1Q0D2K3 151 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 GALEQ14376 348 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 CEACAM21Q3KPI0 293 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 CHRFAM7AQ494W8 412 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 WDR38Q5JTN6 314 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 LAIR2Q6ISS4 152 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 WDR82Q6UXN9 313 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 ZNF841Q6ZN19 808 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 C1orf229Q6ZS94 237 aaPredicted RBP10.85□□□□□ -0.67
VPS28-216ENST00000533806 DHRSXQ8N5I4 330 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 OR52I1Q8NGK6 324 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 FBLIM1Q8WUP2 373 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 NRG4Q8WWG1 115 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 PIGCQ92535 297 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 DACT3Q96B18 629 aaPredicted RBP10.85□□□□□ -0.67
VPS28-216ENST00000533806 FAM71F1Q96KD3 344 aaPredicted RBP10.85□□□□□ -0.67
VPS28-216ENST00000533806 MICU1Q9BPX6 476 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 METTL17Q9H7H0 456 aaPredicted RBP10.85□□□□□ -0.67
VPS28-216ENST00000533806 LPAR2Q9HBW0 351 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 FGF20Q9NP95 211 aaPredicted RBP10.85□□□□□ -0.67
VPS28-216ENST00000533806 GNG8Q9UK08 70 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 PIGLQ9Y2B2 252 aa10.85□□□□□ -0.67
VPS28-216ENST00000533806 RPL36Q9Y3U8 105 aaKnown RBP10.85□□□□□ -0.67
VPS28-216ENST00000533806 ERICH4A6NGS2 130 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 TMEM210A6NLX4 147 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 ANXA2P2A6NMY6 339 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 H0YAE9 185 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 TRAPPC2LH3BP13 241 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 LGALS8O00214 317 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 CDIPTO14735 213 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 MTRF1O75570 445 aaKnown RBP10.84□□□□□ -0.67
VPS28-216ENST00000533806 FADS2O95864 444 aaKnown RBP10.84□□□□□ -0.67
VPS28-216ENST00000533806 AVPP01185 164 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 GNAO1P09471 354 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 FAM157CP0CG43 387 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 IRF2P14316 349 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 FAHP16930 419 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 NANOS3P60323 173 aaKnown RBP10.84□□□□□ -0.67
VPS28-216ENST00000533806 IL18R1Q13478 541 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 KLHL22Q53GT1 634 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 TEX36Q5VZQ5 186 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 LYPD2Q6UXB3 125 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 DCDC5Q6ZRR9 648 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 DOK3Q7L591 496 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 LHFPL3Q86UP9 236 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 ZDHHC23Q8IYP9 409 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 SYS1Q8N2H4 156 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 C19orf18Q8NEA5 215 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 OR5A2Q8NGI9 324 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 OR2G2Q8NGZ5 317 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 CNIH3Q8TBE1 160 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 CYGBQ8WWM9 190 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 TFAP2CQ92754 450 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 PELI1Q96FA3 418 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 ADI1Q9BV57 179 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 RTL8AQ9BWD3 113 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 BEX2Q9BXY8 128 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 SHARPINQ9H0F6 387 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 OR51I2Q9H344 312 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 ISG20L2Q9H9L3 353 aaKnown RBP10.84□□□□□ -0.67
VPS28-216ENST00000533806 INPP5EQ9NRR6 644 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 ERVK13-1Q9NX77 482 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 FRRS1LQ9P0K9 344 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 ENPP5Q9UJA9 477 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 GTF2A1LQ9UNN4 478 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 HSPE1-MOB4S4R3N1 261 aa10.84□□□□□ -0.67
VPS28-216ENST00000533806 SRRM5B3KS81 715 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 FOXH1O75593 365 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms