RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 TGS1Q96RS0 853 aaKnown RBP1.93□□□□□ -2.1
CD44-233ENST00000531141 FGF23Q9GZV9 251 aaPredicted RBP1.93□□□□□ -2.1
CD44-233ENST00000531141 EXOSC4Q9NPD3 245 aaKnown RBP1.93□□□□□ -2.1
CD44-233ENST00000531141 C8orf17Q9NRJ1 99 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 CBY1Q9Y3M2 126 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 ROCK1Q13464 1354 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 KIF24Q5T7B8 1368 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 ADGRB1O14514 1584 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 BCORQ6W2J9 1755 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 DENND4AQ7Z401 1863 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 ANKRD31Q8N7Z5 1873 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 ZNF462Q96JM2 2506 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 USP24Q9UPU5 2620 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 DMXL1Q9Y485 3027 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 ANKRD26Q9UPS8 1709 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 A0A1B0GW55 424 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 ZNF233A6NK53 670 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 TRIM64CA6NLI5 447 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 H7C0C1 242 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 SNX4O95219 450 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 HLA-DQB1P01920 261 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 TPM2P07951 284 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 DUX4L2P0CJ85 424 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 DUX4L3P0CJ86 424 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 DUX4L5P0CJ88 424 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 DUX4L6P0CJ89 424 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 DUX4L7P0CJ90 424 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 PEX19P40855 299 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 RBM34P42696 430 aaKnown RBP1.92□□□□□ -2.1
CD44-233ENST00000531141 ATP5OP48047 213 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 MRPL19P49406 292 aaKnown RBP1.92□□□□□ -2.1
CD44-233ENST00000531141 CRISP1P54107 249 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 RPL23P62829 140 aaKnown RBP1.92□□□□□ -2.1
CD44-233ENST00000531141 PPIDQ08752 370 aaKnown RBP1.92□□□□□ -2.1
CD44-233ENST00000531141 SRSF5Q13243 272 aaKnown RBP1.92□□□□□ -2.1
CD44-233ENST00000531141 MRPL23Q16540 153 aaKnown RBP1.92□□□□□ -2.1
CD44-233ENST00000531141 LRRC26Q2I0M4 334 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 TPTE2P1Q5T6R2 138 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 CARD17Q5XLA6 110 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 LRRC66Q68CR7 880 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 CBR4Q8N4T8 237 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 C11orf72Q8NBR9 251 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 TTLQ8NG68 377 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 OR6Q1Q8NGQ2 317 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 OR10G6Q8NH81 332 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 COL21A1Q96P44 957 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 C20orf24Q9BUV8 137 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 ZNF160Q9HCG1 818 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 MED4Q9NPJ6 270 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 NMRK1Q9NWW6 199 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 DUX4Q9UBX2 424 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 SLC17A4Q9Y2C5 497 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 KTN1Q86UP2 1357 aaKnown RBP1.92□□□□□ -2.1
CD44-233ENST00000531141 TONSLQ96HA7 1378 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 VPS13AQ96RL7 3174 aa1.92□□□□□ -2.1
CD44-233ENST00000531141 TEP1Q99973 2627 aaKnown RBP1.91□□□□□ -2.1
CD44-233ENST00000531141 SPTBN2O15020 2390 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 CACNA1HO95180 2353 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 RGPD2P0DJD1 1756 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 LAMB2P55268 1798 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 ZNF831Q5JPB2 1677 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 FAM208AQ9UK61 1670 aaKnown RBP1.91□□□□□ -2.1
CD44-233ENST00000531141 IGHV3-72A0A0B4J1Y9 119 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 CCL15-CCL14A0A0B4J2E2 113 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 IGHV1-69DA0A0B4J2H0 117 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 C5orf63A6NC05 138 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 KRBOX1C9JBD0 128 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 LGALS9O00182 355 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 AP3B1O00203 1094 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 LSM1O15116 133 aaKnown RBP1.91□□□□□ -2.1
CD44-233ENST00000531141 EIF3HO15372 352 aaKnown RBP eCLIP1.91□□□□□ -2.1
CD44-233ENST00000531141 CHMP2AO43633 222 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 FLOT1O75955 427 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 PAHP00439 452 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 CD37P11049 281 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 OR1E1P30953 314 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 SYKP43405 635 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 RPS23P62266 143 aaKnown RBP1.91□□□□□ -2.1
CD44-233ENST00000531141 LIPEQ05469 1076 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 TGM3Q08188 693 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 CCL15Q16663 113 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 C1orf185Q5T7R7 199 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 CENPQQ7L2Z9 268 aaPredicted RBP1.91□□□□□ -2.1
CD44-233ENST00000531141 CBLN2Q8IUK8 224 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 MIR7-3HGQ8N6C7 128 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 LINC00304Q8N9R0 145 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 LYPD6BQ8NI32 183 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 N4BP2L2Q92802 583 aaPredicted RBP1.91□□□□□ -2.1
CD44-233ENST00000531141 MCUR1Q96AQ8 359 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 XPO6Q96QU8 1125 aaKnown RBP1.91□□□□□ -2.1
CD44-233ENST00000531141 RBBP8Q99708 897 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 GGTLC1Q9BX51 225 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 TEKT3Q9BXF9 490 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 SAMD10Q9BYL1 202 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 FRMD8P1Q9BZ68 369 aaPredicted RBP1.91□□□□□ -2.1
CD44-233ENST00000531141 UPF3BQ9BZI7 483 aaKnown RBP1.91□□□□□ -2.1
CD44-233ENST00000531141 ANKRA2Q9H9E1 313 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 TMEM27Q9HBJ8 222 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 HELZ2Q9BYK8 2649 aaKnown RBP1.91□□□□□ -2.1
CD44-233ENST00000531141 ZFYVE26Q68DK2 2539 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms