RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 RPS9P46781 194 aaKnown RBP5.3□□□□□ -1.56
LSM1-202ENST00000520286 RPS5P46782 204 aaKnown RBP5.3□□□□□ -1.56
LSM1-202ENST00000520286 RGRP47804 291 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 HCAR3P49019 387 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 CSNK1EP49674 416 aaKnown RBP5.3□□□□□ -1.56
LSM1-202ENST00000520286 UGT2B15P54855 530 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 DSTNP60981 165 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 BNIP2Q12982 314 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 PIGHQ14442 188 aaPredicted RBP5.3□□□□□ -1.56
LSM1-202ENST00000520286 PDK2Q15119 407 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 MAPRE2Q15555 327 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 SOHLH1Q5JUK2 328 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 DCUN1D2Q6PH85 259 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 CERS6Q6ZMG9 384 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 PNKDQ8N490 385 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 LINC00469Q8N7U9 141 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 BPIFB6Q8NFQ5 453 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 CANT1Q8WVQ1 401 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 DCUN1D4Q92564 292 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 UCN3Q969E3 161 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 FCRL1Q96LA6 429 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 CEP19Q96LK0 163 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 RDH12Q96NR8 316 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 EBNA1BP2Q99848 306 aaKnown RBP5.3□□□□□ -1.56
LSM1-202ENST00000520286 KIFC1Q9BW19 673 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 CHID1Q9BWS9 393 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 ZNF717Q9BY31 904 aaPredicted RBP5.3□□□□□ -1.56
LSM1-202ENST00000520286 MRPL22Q9NWU5 206 aaKnown RBP5.3□□□□□ -1.56
LSM1-202ENST00000520286 TMEM216Q9P0N5 145 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 SLC25A15Q9Y619 301 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 ZFHX2Q9C0A1 2572 aaPredicted RBP5.3□□□□□ -1.56
LSM1-202ENST00000520286 CHD7Q9P2D1 2997 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 TRAV25A0A0B4J276 109 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 A0A1B0GTQ1 180 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 DHRS12A0PJE2 317 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 METTL15A6NJ78 407 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 OR5K4A6NMS3 321 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 CDC7O00311 574 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 RAD51BO15315 384 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 CHST1O43916 411 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 CST8O60676 142 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 EIF3GO75821 320 aaKnown RBP eCLIP5.29□□□□□ -1.56
LSM1-202ENST00000520286 SRP72O76094 671 aaKnown RBP5.29□□□□□ -1.56
LSM1-202ENST00000520286 SUPT7LO94864 414 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 CDK14O94921 469 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 SEMA3DO95025 777 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 LSM8O95777 96 aaKnown RBP5.29□□□□□ -1.56
LSM1-202ENST00000520286 CLIC3O95833 236 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 CALB1P05937 261 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 KLK2P20151 261 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 KDELR1P24390 212 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 STOMP27105 288 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 UGT2B10P36537 528 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 TALDO1P37837 337 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 RBMXP38159 391 aaKnown RBP5.29□□□□□ -1.56
LSM1-202ENST00000520286 SLC26A3P40879 764 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 RPL14P50914 215 aaKnown RBP5.29□□□□□ -1.56
LSM1-202ENST00000520286 SSR4P51571 173 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 SUB1P53999 127 aaKnown RBP eCLIP5.29□□□□□ -1.56
LSM1-202ENST00000520286 PRPS1P60891 318 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 GTF2BQ00403 316 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 PRKCDQ05655 676 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 BAMBIQ13145 260 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 FADDQ13158 208 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 STX5Q13190 355 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 ILKQ13418 452 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 Q5BKY6 102 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 TCEAL5Q5H9L2 206 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 CASC10Q5T4H9 136 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 XKRXQ6PP77 449 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 TMEM179Q6ZVK1 233 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 ZNF767PQ75MW2 155 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 STRADAQ7RTN6 431 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 DHFR2Q86XF0 187 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 LYG1Q8N1E2 194 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 LINC00612Q8N6U2 182 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 PQLC3Q8N755 202 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 VN1R2Q8NFZ6 395 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 OR5H6Q8NGV6 325 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 NEIL3Q8TAT5 605 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 SLC7A13Q8TCU3 470 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 BLOC1S5Q8TDH9 187 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 CYGBQ8WWM9 190 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 ROPN1LQ96C74 230 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 CEP170P1Q96L14 293 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 UQCC2Q9BRT2 126 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 TEKT3Q9BXF9 490 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 SRMSQ9H3Y6 488 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 WDR55Q9H6Y2 383 aaPredicted RBP5.29□□□□□ -1.56
LSM1-202ENST00000520286 CLCF1Q9UBD9 225 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 UXTQ9UBK9 157 aaPredicted RBP5.29□□□□□ -1.56
LSM1-202ENST00000520286 ZNF256Q9Y2P7 627 aaPredicted RBP5.29□□□□□ -1.56
LSM1-202ENST00000520286 AP3M1Q9Y2T2 418 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 CDH10Q9Y6N8 788 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 PCM1Q15154 2024 aa5.29□□□□□ -1.56
LSM1-202ENST00000520286 LRRC37A2A6NM11 1700 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 DOCK5Q9H7D0 1870 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 PSMB11A5LHX3 300 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 LINC00862A6NCI5 91 aa5.28□□□□□ -1.56
LSM1-202ENST00000520286 CENPXA8MT69 81 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms