RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 UBAC2Q8NBM4 344 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 OR13C8Q8NGS7 320 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 OR52N5Q8NH56 324 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 SECTM1Q8WVN6 248 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 MRPS24Q96EL2 167 aaKnown RBP14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 TWSG1Q9GZX9 223 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 METTL9Q9H1A3 318 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 CBY1Q9Y3M2 126 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 WDR81Q562E7 1941 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 hCG_1809904A0A1W2PP81 198 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 A0A1W2PR64 198 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 A0A1W2PRV1 198 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 BHLHE40O14503 412 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 ARPC3O15145 178 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 HBE1P02100 147 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 ARG1P05089 322 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 TOMM34Q15785 309 aaPredicted RBP14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 GUK1Q16774 197 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 OR2T2Q6IF00 324 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 C1orf87Q8N0U7 546 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 BHLHE23Q8NDY6 225 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 RNF128Q8TEB7 428 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 C4orf51C9J302 202 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 ZNF728P0DKX0 622 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 VSIG10L2P0DP72 767 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 TLE4Q04727 773 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 MIDNQ504T8 468 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 TMEM128Q5BJH2 165 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 CMTM1Q8IZ96 169 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 MAFAQ8NHW3 353 aaPredicted RBP14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 SGK3Q96BR1 496 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 LAP3P28838 519 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 CD96P40200 585 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 FOXK1P85037 733 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 EGR3Q06889 387 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 MRGPRX4Q96LA9 322 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 GNRHR2Q96P88 292 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 SUCNR1Q9BXA5 334 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 C12orf49Q9H741 205 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 PHF1O43189 567 aaPredicted RBP14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 CDAP32320 146 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 CCL11P51671 97 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 SHARPINQ9H0F6 387 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 PIGLQ9Y2B2 252 aa14.59□□□□□ -0.07
CCDC88B-209ENST00000494080 DICER1Q9UPY3 1922 aaKnown RBP14.58□□□□□ -0.07
CCDC88B-209ENST00000494080 A0A1W2PPH5 198 aa14.58□□□□□ -0.07
CCDC88B-209ENST00000494080 ST8SIA3O43173 380 aa14.58□□□□□ -0.07
CCDC88B-209ENST00000494080 FOXS1O43638 330 aa14.58□□□□□ -0.07
CCDC88B-209ENST00000494080 EFNA3P52797 238 aa14.58□□□□□ -0.07
CCDC88B-209ENST00000494080 RAB4BP61018 213 aa14.58□□□□□ -0.07
CCDC88B-209ENST00000494080 ZNF141Q15928 474 aa14.58□□□□□ -0.07
CCDC88B-209ENST00000494080 OR5AP2Q8NGF4 316 aa14.58□□□□□ -0.07
CCDC88B-209ENST00000494080 CPNE4Q96A23 557 aaPredicted RBP14.58□□□□□ -0.07
CCDC88B-209ENST00000494080 CMBLQ96DG6 245 aa14.58□□□□□ -0.07
CCDC88B-209ENST00000494080 GPR84Q9NQS5 396 aa14.58□□□□□ -0.07
CCDC88B-209ENST00000494080 SPTAN1Q13813 2472 aaKnown RBP14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 SCN5AQ14524 2016 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 C9orf170A2RU37 121 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 AP4M1O00189 453 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 XRCC2O43543 280 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 MBP02144 154 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 MSR1P21757 451 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 EPHA8P29322 1005 aaPredicted RBP14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 DVL1P1P54792 670 aaPredicted RBP14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 ADIRFQ15847 76 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 ATRAIDQ6UW56 229 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 C15orf54Q8N8G6 183 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 RBMXL1Q96E39 390 aaKnown RBP14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 FER1L6-AS2Q96M78 137 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 ADRA2AP08913 450 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 FGF2P09038 288 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 POLR2GP62487 172 aaKnown RBP eCLIP14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 HINT2Q9BX68 163 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 HAAOP46952 286 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 WDR38Q5JTN6 314 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 THEM4Q5T1C6 240 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 ATPAF1Q5TC12 328 aaPredicted RBP14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 ZNF600Q6ZNG1 722 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 DGAT2L6Q6ZPD8 337 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 GPR179Q6PRD1 2367 aa14.58□□□□□ -0.08
CCDC88B-209ENST00000494080 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP14.57□□□□□ -0.08
CCDC88B-209ENST00000494080 ALG1L2C9J202 215 aa14.57□□□□□ -0.08
CCDC88B-209ENST00000494080 VAMP5O95183 116 aa14.57□□□□□ -0.08
CCDC88B-209ENST00000494080 TMEM123Q8N131 208 aa14.57□□□□□ -0.08
CCDC88B-209ENST00000494080 OR51A4Q8NGJ6 313 aa14.57□□□□□ -0.08
CCDC88B-209ENST00000494080 SEC11CQ9BY50 192 aa14.57□□□□□ -0.08
CCDC88B-209ENST00000494080 KCNIP1Q9NZI2 227 aa14.57□□□□□ -0.08
CCDC88B-209ENST00000494080 ABCD4O14678 606 aa14.57□□□□□ -0.08
CCDC88B-209ENST00000494080 FABP4P15090 132 aa14.57□□□□□ -0.08
CCDC88B-209ENST00000494080 MYBPHQ13203 477 aa14.57□□□□□ -0.08
CCDC88B-209ENST00000494080 ZNF684Q5T5D7 378 aa14.57□□□□□ -0.08
CCDC88B-209ENST00000494080 SAMD10Q9BYL1 202 aa14.57□□□□□ -0.08
CCDC88B-209ENST00000494080 GHRLQ9UBU3 117 aa14.57□□□□□ -0.08
CCDC88B-209ENST00000494080 DOPEY2Q9Y3R5 2298 aa14.57□□□□□ -0.08
CCDC88B-209ENST00000494080 TMEM272A0A1B0GTI8 110 aa14.57□□□□□ -0.08
CCDC88B-209ENST00000494080 TRAPPC2LH3BP13 241 aa14.57□□□□□ -0.08
CCDC88B-209ENST00000494080 IL10RAQ13651 578 aa14.57□□□□□ -0.08
CCDC88B-209ENST00000494080 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.57□□□□□ -0.08
CCDC88B-209ENST00000494080 AK3Q9UIJ7 227 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms