RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 UBE2E1P51965 193 aa11.13□□□□□ -0.63
CHD3-209ENST00000473376 MXRA7P84157 204 aa11.13□□□□□ -0.63
CHD3-209ENST00000473376 AANATQ16613 207 aa11.13□□□□□ -0.63
CHD3-209ENST00000473376 SLC35D3Q5M8T2 416 aa11.13□□□□□ -0.63
CHD3-209ENST00000473376 ASPHD2Q6ICH7 369 aa11.13□□□□□ -0.63
CHD3-209ENST00000473376 ZNF788Q6ZQV5 615 aa11.13□□□□□ -0.63
CHD3-209ENST00000473376 FAM57BQ71RH2 274 aa11.13□□□□□ -0.63
CHD3-209ENST00000473376 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.13□□□□□ -0.63
CHD3-209ENST00000473376 OR6N2Q8NGY6 317 aa11.13□□□□□ -0.63
CHD3-209ENST00000473376 OR5P3Q8WZ94 311 aa11.13□□□□□ -0.63
CHD3-209ENST00000473376 CCT8L2Q96SF2 557 aa11.13□□□□□ -0.63
CHD3-209ENST00000473376 CCL13Q99616 98 aa11.13□□□□□ -0.63
CHD3-209ENST00000473376 FAM107BQ9H098 131 aa11.13□□□□□ -0.63
CHD3-209ENST00000473376 METTL8Q9H825 291 aaKnown RBP11.13□□□□□ -0.63
CHD3-209ENST00000473376 RHBDD3Q9Y3P4 386 aa11.13□□□□□ -0.63
CHD3-209ENST00000473376 VWFP04275 2813 aa11.13□□□□□ -0.63
CHD3-209ENST00000473376 TRBV23-1A0A0A0MS06 115 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 A0A0G2JK05 382 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 NKX6-3A6NJ46 265 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 SIGLEC5O15389 551 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 HMGN1P05114 100 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 LYNP07948 512 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 ACAA1P09110 424 aaPredicted RBP11.12□□□□□ -0.63
CHD3-209ENST00000473376 H2BFMP0C1H6 154 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 CLUP10909 449 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 AMY2BP19961 511 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 ATP6V1B2P21281 511 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 DCTDP32321 178 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 HOXA4Q00056 320 aaPredicted RBP11.12□□□□□ -0.63
CHD3-209ENST00000473376 MIDNQ504T8 468 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 ZBTB37Q5TC79 503 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 CYP2R1Q6VVX0 501 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 ERI1Q8IV48 349 aaKnown RBP11.12□□□□□ -0.63
CHD3-209ENST00000473376 OR10G2Q8NGC3 310 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 ANGPTL6Q8NI99 470 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 TAF15Q92804 592 aaKnown RBP eCLIP11.12□□□□□ -0.63
CHD3-209ENST00000473376 TNFRSF14Q92956 283 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 ASB9Q96DX5 294 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 PGAM5Q96HS1 289 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 FEVQ99581 238 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 RBM4BQ9BQ04 359 aaKnown RBP11.12□□□□□ -0.63
CHD3-209ENST00000473376 ARMC1Q9NVT9 282 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 RASL12Q9NYN1 266 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 ZNF319Q9P2F9 582 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 FBLN5Q9UBX5 448 aa11.12□□□□□ -0.63
CHD3-209ENST00000473376 IGHV3OR15-7A0A075B7D8 119 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 A0A0U1RQV5 110 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 SLC22A31A6NKX4 558 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 ACOT8O14734 319 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 NPFFO15130 113 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 SOX14O95416 240 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 PSMA6P60900 246 aaKnown RBP11.11□□□□□ -0.63
CHD3-209ENST00000473376 CSNK2BP67870 215 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 BLMHQ13867 455 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 LCN1P1Q5VSP4 162 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 DHRS7BQ6IAN0 325 aaPredicted RBP11.11□□□□□ -0.63
CHD3-209ENST00000473376 Q6ZSV7 163 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 Q8N7P7 452 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 BEND2Q8NDZ0 799 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 OR5D13Q8NGL4 314 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 ZNF671Q8TAW3 534 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 GIPC3Q8TF64 312 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 HIST1H2AAQ96QV6 131 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 PKP2Q99959 881 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 NIPSNAP1Q9BPW8 284 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 TEX12Q9BXU0 123 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 FAM234AQ9H0X4 552 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 C1orf21Q9H246 121 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 TNFRSF19Q9NS68 423 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 ONECUT1Q9UBC0 465 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 DNAJB11Q9UBS4 358 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 SLC25A10Q9UBX3 287 aaPredicted RBP11.11□□□□□ -0.63
CHD3-209ENST00000473376 SF3B6Q9Y3B4 125 aaKnown RBP11.11□□□□□ -0.63
CHD3-209ENST00000473376 LRP12Q9Y561 859 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 N6AMT1Q9Y5N5 214 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 U3KQV3 271 aa11.11□□□□□ -0.63
CHD3-209ENST00000473376 OR5B21A6NL26 309 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 B2RBV5 119 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 PRR23D1E9PI22 279 aaPredicted RBP11.1□□□□□ -0.63
CHD3-209ENST00000473376 RNASEK-C17orf49H0YIS7 233 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 H3BN98 237 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 E2F6O75461 281 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 PRR23D2P0DMB1 279 aaPredicted RBP11.1□□□□□ -0.63
CHD3-209ENST00000473376 CALB2P22676 271 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 ACKR3P25106 362 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 MAP2K3P46734 347 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 CDK5Q00535 292 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 PRDX4Q13162 271 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 CEACAM21Q3KPI0 293 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 KCTD18Q6PI47 426 aaPredicted RBP11.1□□□□□ -0.63
CHD3-209ENST00000473376 ZDHHC23Q8IYP9 409 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 FAM216BQ8N7L0 139 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 OR5A2Q8NGI9 324 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 NSL1Q96IY1 281 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 RNF170Q96K19 258 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 YIPF3Q9GZM5 350 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 TCF7L1Q9HCS4 588 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 VNN3Q9NY84 501 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 NLKQ9UBE8 527 aa11.1□□□□□ -0.63
CHD3-209ENST00000473376 ZNF816-ZNF321PA0A0X1KG74 233 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms