RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 RAB8AP61006 207 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 TFAMQ00059 246 aaKnown RBP3.29□□□□□ -1.88
HMGB1-204ENST00000399489 CD164Q04900 197 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 KCNJ11Q14654 390 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 TRAM1Q15629 374 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 LRRC36Q1X8D7 754 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 TBC1D28Q2M2D7 210 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF658BQ4V348 819 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-204ENST00000399489 KLHL12Q53G59 568 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 FAM27D1Q5T7N8 215 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 FHL5Q5TD97 284 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 EPGNQ6UW88 154 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 PRSS41Q7RTY9 318 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 PTAR1Q7Z6K3 402 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-204ENST00000399489 NRMQ8IXM6 262 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 KIR2DL5AQ8N109 375 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 OR51D1Q8NGF3 324 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 KIR2DL5BQ8NHK3 375 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 TMEM234Q8WY98 164 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 ARPC1AQ92747 370 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 NABP1Q96AH0 204 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 C9orf85Q96MD7 179 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF285Q96NJ3 590 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 RASL11BQ9BPW5 248 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 NMUR2Q9GZQ4 415 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 DSN1Q9H410 356 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 REEP1Q9H902 201 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 SPRR3Q9UBC9 169 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 RAB26Q9ULW5 256 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 GPATCH8Q9UKJ3 1502 aaKnown RBP3.29□□□□□ -1.88
HMGB1-204ENST00000399489 RGS12O14924 1447 aa3.29□□□□□ -1.88
HMGB1-204ENST00000399489 SETBP1Q9Y6X0 1596 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 NCOA2Q15596 1464 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 ARHGAP23Q9P227 1491 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 SUPT6HQ7KZ85 1726 aaKnown RBP3.28□□□□□ -1.88
HMGB1-204ENST00000399489 MSH6P52701 1360 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 CEMIPQ8WUJ3 1361 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 IGHV3-38A0A0C4DH36 116 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 LINC00587B1AMM8 73 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 F6UB75 175 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 K7ENP7 123 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 TCAPO15273 167 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 TRMUO75648 421 aaKnown RBP3.28□□□□□ -1.88
HMGB1-204ENST00000399489 GAS8-AS1O95177 125 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 KRT75O95678 551 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 IGHG1P01857 330 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 CD74P04233 296 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 ISG15P05161 165 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 NBEAP1P0C6P0 100 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 PAX1P15863 534 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 SSTR5P35346 364 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 GPX4P36969 197 aaPredicted RBP3.28□□□□□ -1.88
HMGB1-204ENST00000399489 SLCO1A2P46721 670 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 ACOT2P49753 483 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 ERVFC1-1P60608 527 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 ERVK-16P61578 105 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 ESRRGP62508 458 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 OR7A5Q15622 319 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 TMEM176BQ3YBM2 270 aaPredicted RBP3.28□□□□□ -1.88
HMGB1-204ENST00000399489 HBMQ6B0K9 141 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 FAM131AQ6UXB0 335 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF329Q86UD4 541 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 RDH10Q8IZV5 341 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 ATPAF2Q8N5M1 289 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 OR10R2Q8NGX6 335 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 FAM45AQ8TCE6 357 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 TMEM54Q969K7 222 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 SLC25A38Q96DW6 304 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 CNRIP1Q96F85 164 aaPredicted RBP3.28□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF354BQ96LW1 612 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 KCTD7Q96MP8 289 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 Q96MT0 163 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF300Q96RE9 604 aaPredicted RBP3.28□□□□□ -1.88
HMGB1-204ENST00000399489 GPR21Q99679 349 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 APOL4Q9BPW4 351 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 AIF1LQ9BQI0 150 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 CDCA4Q9BXL8 241 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 ARL6Q9H0F7 186 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 SPANXB1Q9NS25 103 aaPredicted RBP3.28□□□□□ -1.88
HMGB1-204ENST00000399489 ABCC13Q9NSE7 274 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF225Q9UK10 706 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 CES1P1Q9UKY3 287 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 FARSAQ9Y285 508 aaKnown RBP3.28□□□□□ -1.88
HMGB1-204ENST00000399489 ROBO1Q9Y6N7 1651 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 FRMPD3Q5JV73 1810 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 SCAF11Q99590 1463 aaKnown RBP3.28□□□□□ -1.88
HMGB1-204ENST00000399489 ARHGAP35Q9NRY4 1499 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 MBD5Q9P267 1494 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 COL16A1Q07092 1604 aaPredicted RBP3.28□□□□□ -1.88
HMGB1-204ENST00000399489 NID2Q14112 1375 aa3.28□□□□□ -1.88
HMGB1-204ENST00000399489 SLIT1O75093 1534 aa3.28□□□□□ -1.89
HMGB1-204ENST00000399489 IGHV1OR21-1A0A087WYE8 117 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 TRABD2BA6NFA1 517 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 GJE1A6NN92 205 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 C21orf140B9A014 251 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 DISC1C4P0D8 188 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 ANKRD65E5RJM6 399 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 E9PLD3 99 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 MGRN1O60291 552 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 SLC2A10O95528 541 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms