RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 FAM103A1Q9BTL3 118 aaKnown RBP6.47□□□□□ -1.37
UPF2-203ENST00000397053 ADGRL4Q9HBW9 690 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 KPTNQ9Y664 436 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 ANKUB1A6NFN9 424 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 TOX3O15405 576 aaPredicted RBP6.47□□□□□ -1.37
UPF2-203ENST00000397053 EML2O95834 649 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 RAB7AP51149 207 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 FCN2Q15485 313 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 ZNF620Q6ZNG0 422 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 TIPARPQ7Z3E1 657 aaKnown RBP6.47□□□□□ -1.37
UPF2-203ENST00000397053 OR13D1Q8NGV5 346 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 PTPMT1Q8WUK0 201 aaPredicted RBP6.47□□□□□ -1.37
UPF2-203ENST00000397053 PCNPQ8WW12 178 aaKnown RBP6.47□□□□□ -1.37
UPF2-203ENST00000397053 ADGRG7Q96K78 797 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 SAP30LQ9HAJ7 183 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 RHOFQ9HBH0 211 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 RANGRFQ9HD47 186 aaPredicted RBP6.47□□□□□ -1.37
UPF2-203ENST00000397053 PSG11Q9UQ72 335 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 SDK2Q58EX2 2172 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 OR2T8A6NH00 312 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 DEFB108AA8MXU0 73 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 ZBTB42B2RXF5 422 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 TAAR5O14804 337 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 TAPBPO15533 448 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 MBTPS2O43462 519 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 LANCL1O43813 399 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 FGF7P21781 194 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 PIGPP57054 158 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 OR2F1Q13607 317 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 B3GNT9Q6UX72 402 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 ZNF793Q6ZN11 406 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 NEIL1Q96FI4 390 aaPredicted RBP6.47□□□□□ -1.37
UPF2-203ENST00000397053 SIRT3Q9NTG7 399 aaPredicted RBP6.47□□□□□ -1.37
UPF2-203ENST00000397053 NDUFB11Q9NX14 153 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 NSG2Q9Y328 171 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 NOTCH3Q9UM47 2321 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 SPRY1O43609 319 aaPredicted RBP6.47□□□□□ -1.37
UPF2-203ENST00000397053 CLEC2LP0C7M8 214 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 IL9P15248 144 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 HCCSP53701 268 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 SLC17A1Q14916 467 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 OTPQ5XKR4 325 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 MARC2Q969Z3 335 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 PLEKHA2Q9HB19 425 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 A4GNTQ9UNA3 340 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 CSAG2Q9Y5P2 127 aa6.47□□□□□ -1.37
UPF2-203ENST00000397053 NUP205Q92621 2012 aa6.46□□□□□ -1.37
UPF2-203ENST00000397053 A0A087WUJ7 227 aa6.46□□□□□ -1.37
UPF2-203ENST00000397053 H3BMH7 237 aa6.46□□□□□ -1.37
UPF2-203ENST00000397053 GNG7O60262 68 aa6.46□□□□□ -1.37
UPF2-203ENST00000397053 ORM1P02763 201 aa6.46□□□□□ -1.37
UPF2-203ENST00000397053 SLC25A5P05141 298 aaKnown RBP6.46□□□□□ -1.37
UPF2-203ENST00000397053 ARNTP27540 789 aa6.46□□□□□ -1.37
UPF2-203ENST00000397053 CDAP32320 146 aa6.46□□□□□ -1.37
UPF2-203ENST00000397053 LSM11P83369 360 aaKnown RBP eCLIP6.46□□□□□ -1.37
UPF2-203ENST00000397053 EGR3Q06889 387 aa6.46□□□□□ -1.37
UPF2-203ENST00000397053 CLEC12BQ2HXU8 276 aa6.46□□□□□ -1.37
UPF2-203ENST00000397053 NUFIP2Q7Z417 695 aaKnown RBP6.46□□□□□ -1.37
UPF2-203ENST00000397053 CRYGNQ8WXF5 182 aa6.46□□□□□ -1.37
UPF2-203ENST00000397053 ING1Q9UK53 422 aaPredicted RBP6.46□□□□□ -1.37
UPF2-203ENST00000397053 MROH1Q8NDA8 1641 aa6.46□□□□□ -1.37
UPF2-203ENST00000397053 PHLPP1O60346 1717 aa6.46□□□□□ -1.37
UPF2-203ENST00000397053 SERPINE3A8MV23 424 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 HMGN4O00479 90 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 TMPRSS2O15393 492 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 SULT1A3P0DMM9 295 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 SULT1A4P0DMN0 295 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 RPL12P30050 165 aaKnown RBP6.46□□□□□ -1.38
UPF2-203ENST00000397053 ERVFC1-1P60608 527 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 TNXAQ16473 311 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 AVPI1Q5T686 147 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 MOB1BQ7L9L4 216 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 TMEM179BQ7Z7N9 219 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 NOXO1Q8NFA2 376 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 SHISA4Q96DD7 197 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 TUBB1Q9H4B7 451 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 IGHV1OR21-1A0A087WYE8 117 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 CDK5Q00535 292 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 SPCS2Q15005 226 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 OR4Q3Q8NH05 313 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 VSTM2AQ8TAG5 236 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 SPSB1Q96BD6 273 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 CABLES2Q9BTV7 478 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 ZDHHC11Q9H8X9 412 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 FKBP11Q9NYL4 201 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 OR6C3Q9NZP0 311 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 CLN8Q9UBY8 286 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 UFC1Q9Y3C8 167 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 TRBV23-1A0A0A0MS06 115 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 A0A1W2PPQ1 181 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 ZC3H12DA2A288 527 aaKnown RBP6.46□□□□□ -1.38
UPF2-203ENST00000397053 UPK1AO00322 258 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 FZD6O60353 706 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 OPN1MWP04001 364 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 OPN1MW2P0DN77 364 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 OPN1MW3P0DN78 364 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 CD1EP15812 388 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 GPR6P46095 362 aaPredicted RBP6.46□□□□□ -1.38
UPF2-203ENST00000397053 BAMBIQ13145 260 aa6.46□□□□□ -1.38
UPF2-203ENST00000397053 GUCA2BQ16661 112 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms