RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 OR10K1Q8NGX5 313 aa19.1■□□□□ 0.65
SHMT1-202ENST00000352886 ST8SIA2Q92186 375 aa19.1■□□□□ 0.65
SHMT1-202ENST00000352886 INTS12Q96CB8 462 aaKnown RBP19.1■□□□□ 0.65
SHMT1-202ENST00000352886 SGCZQ96LD1 299 aa19.1■□□□□ 0.65
SHMT1-202ENST00000352886 CHST5Q9GZS9 411 aa19.1■□□□□ 0.65
SHMT1-202ENST00000352886 GHRLQ9UBU3 117 aa19.1■□□□□ 0.65
SHMT1-202ENST00000352886 TEX46H3BTG2 121 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 FCGR2AP12318 317 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 SERPINA2P20848 420 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 OTX2P32243 289 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 NPY4RP50391 375 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 EIF3IQ13347 325 aaKnown RBP19.09■□□□□ 0.65
SHMT1-202ENST00000352886 ZNF345Q14585 488 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 JMJD6Q6NYC1 403 aaPredicted RBP19.09■□□□□ 0.65
SHMT1-202ENST00000352886 ARMC10Q8N2F6 343 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 ARRDC1Q8N5I2 433 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 OR1S1Q8NH92 325 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 PP6455Q8WZ26 134 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 P04436 131 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 NAT2P11245 290 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 B3GALT5-AS1P59052 145 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 TAS2R31P59538 309 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 SNAI3Q3KNW1 292 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 BEX5Q5H9J7 111 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 PDZD9Q8IXQ8 264 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 OR14L1PQ8NHC6 308 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 PIGTQ969N2 578 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 VRK1Q99986 396 aaPredicted RBP19.09■□□□□ 0.65
SHMT1-202ENST00000352886 WDR13Q9H1Z4 485 aa19.09■□□□□ 0.65
SHMT1-202ENST00000352886 KANTRA0A1W2PQU2 76 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 EEF1E1-BLOC1S5C9J1V9 151 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 OR2F2O95006 317 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 ALDH3B1P43353 468 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 RAC3P60763 192 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 UBA52P62987 128 aaKnown RBP19.08■□□□□ 0.64
SHMT1-202ENST00000352886 OR2F1Q13607 317 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 FAM27BQ5VT28 67 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 OR5H2Q8NGV7 314 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 SLC39A7Q92504 469 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 SPTSSAQ969W0 71 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 LINC00052Q96N35 136 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 GUCD1Q96NT3 240 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 ST6GALNAC5Q9BVH7 336 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 SMOC1Q9H4F8 434 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 SESN1Q9Y6P5 492 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 RNF222A6NCQ9 220 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 MTRF1O75570 445 aaKnown RBP19.08■□□□□ 0.64
SHMT1-202ENST00000352886 AMY2BP19961 511 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 BLVRBP30043 206 aaPredicted RBP19.08■□□□□ 0.64
SHMT1-202ENST00000352886 SRD5A2P31213 254 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 DLSTP36957 453 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 MRPS34P82930 218 aaKnown RBP19.08■□□□□ 0.64
SHMT1-202ENST00000352886 Q0VFX4 171 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 PXDC1Q5TGL8 231 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 PPP1R32Q7Z5V6 425 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 RELL2Q8NC24 303 aaPredicted RBP19.08■□□□□ 0.64
SHMT1-202ENST00000352886 S100A13Q99584 98 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 C5orf66Q9H5L9 145 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 ELL3Q9HB65 397 aaPredicted RBP19.08■□□□□ 0.64
SHMT1-202ENST00000352886 GPR132Q9UNW8 380 aa19.08■□□□□ 0.64
SHMT1-202ENST00000352886 APOC1P02654 83 aa19.07■□□□□ 0.64
SHMT1-202ENST00000352886 ZP3P21754 424 aa19.07■□□□□ 0.64
SHMT1-202ENST00000352886 CBX5P45973 191 aa19.07■□□□□ 0.64
SHMT1-202ENST00000352886 TMEM128Q5BJH2 165 aa19.07■□□□□ 0.64
SHMT1-202ENST00000352886 HAS2Q92819 552 aa19.07■□□□□ 0.64
SHMT1-202ENST00000352886 ZC3H10Q96K80 434 aaKnown RBP19.07■□□□□ 0.64
SHMT1-202ENST00000352886 SF3B5Q9BWJ5 86 aaKnown RBP19.07■□□□□ 0.64
SHMT1-202ENST00000352886 C5orf51A6NDU8 294 aa19.06■□□□□ 0.64
SHMT1-202ENST00000352886 DBX1A6NMT0 343 aa19.06■□□□□ 0.64
SHMT1-202ENST00000352886 FOXI3A8MTJ6 420 aaPredicted RBP19.06■□□□□ 0.64
SHMT1-202ENST00000352886 CTRB1P17538 263 aa19.06■□□□□ 0.64
SHMT1-202ENST00000352886 TAGLNQ01995 201 aaKnown RBP19.06■□□□□ 0.64
SHMT1-202ENST00000352886 CTRB2Q6GPI1 263 aa19.06■□□□□ 0.64
SHMT1-202ENST00000352886 SREK1IP1Q8N9Q2 155 aaPredicted RBP19.06■□□□□ 0.64
SHMT1-202ENST00000352886 THAP6Q8TBB0 222 aa19.06■□□□□ 0.64
SHMT1-202ENST00000352886 C13orf42A0A1B0GVH6 325 aa19.06■□□□□ 0.64
SHMT1-202ENST00000352886 IGHEP01854 428 aa19.06■□□□□ 0.64
SHMT1-202ENST00000352886 NTF4P34130 210 aa19.06■□□□□ 0.64
SHMT1-202ENST00000352886 SLC23A3Q6PIS1 610 aa19.06■□□□□ 0.64
SHMT1-202ENST00000352886 Q6ZSR3 168 aa19.06■□□□□ 0.64
SHMT1-202ENST00000352886 ACOT7LQ6ZUV0 252 aa19.06■□□□□ 0.64
SHMT1-202ENST00000352886 TMEM230Q96A57 120 aa19.06■□□□□ 0.64
SHMT1-202ENST00000352886 CRLF2Q9HC73 371 aa19.06■□□□□ 0.64
SHMT1-202ENST00000352886 C12orf4Q9NQ89 552 aa19.06■□□□□ 0.64
SHMT1-202ENST00000352886 COQ3Q9NZJ6 369 aa19.06■□□□□ 0.64
SHMT1-202ENST00000352886 TCFL5Q9UL49 500 aa19.06■□□□□ 0.64
SHMT1-202ENST00000352886 PCDHGA1Q9Y5H4 931 aa19.06■□□□□ 0.64
SHMT1-202ENST00000352886 FLVCR1Q9Y5Y0 555 aa19.06■□□□□ 0.64
SHMT1-202ENST00000352886 BCL2L11O43521 198 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 DNPH1O43598 174 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 HPNP05981 417 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 PI3P19957 117 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 LUMP51884 338 aaPredicted RBP19.05■□□□□ 0.64
SHMT1-202ENST00000352886 SNU13P55769 128 aaKnown RBP19.05■□□□□ 0.64
SHMT1-202ENST00000352886 CARD18P57730 90 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 LPAL2Q16609 132 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 DCAF12Q5T6F0 453 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 SLC16A14Q7RTX9 510 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 GGNQ86UU5 652 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 C1orf210Q8IVY1 113 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms