RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 SNRPGP15A8MWD9 76 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 MASP2O00187 686 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 FFAR1O14842 300 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 HAAOP46952 286 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 ADPRHP54922 357 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 RNF212Q495C1 297 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 C12orf73Q69YU5 71 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 H2BFWTQ7Z2G1 175 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 SYS1Q8N2H4 156 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 OR52N4Q8NGI2 321 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 OR14A16Q8NHC5 309 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 IL22RA2Q969J5 263 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 MED18Q9BUE0 208 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 SIRT3Q9NTG7 399 aaPredicted RBP7.83□□□□□ -1.16
RTN3-202ENST00000339997 SIGLEC7Q9Y286 467 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 V9GYH0 126 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 LRP5LA4QPB2 252 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 CDRT15L2A8MXV6 281 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 RER1O15258 196 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 NDUFB6O95139 128 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 TTRP02766 147 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 TMIGD3P0DMS9 266 aaPredicted RBP7.82□□□□□ -1.16
RTN3-202ENST00000339997 TBXA2RP21731 343 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 CHRNA7P36544 502 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 RAB13P51153 203 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 PCBD1P61457 104 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 TIAL1Q01085 375 aaKnown RBP eCLIP7.82□□□□□ -1.16
RTN3-202ENST00000339997 ZNF816Q0VGE8 651 aaPredicted RBP7.82□□□□□ -1.16
RTN3-202ENST00000339997 C1QL3Q5VWW1 255 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 C2orf50Q96LR7 162 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 PLEKHF2Q9H8W4 249 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 ZDHHC11Q9H8X9 412 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 SCN1AP35498 2009 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 C5orf49A4QMS7 147 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 OR5K3A6NET4 321 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 ALOX12BO75342 701 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 OPN1MWP04001 364 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 S100A8P05109 93 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 CD63P08962 238 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 OPN1MW2P0DN77 364 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 OPN1MW3P0DN78 364 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 ZP3P21754 424 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 GSK3AP49840 483 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 DCAF7P61962 342 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 SLC35A1P78382 337 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 OR1J1Q8NGS3 322 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 OR52N5Q8NH56 324 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 CORO2AQ92828 525 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 CHST6Q9GZX3 395 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 SLC25A19Q9HC21 320 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 BCL2L10Q9HD36 194 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 NAV1Q8NEY1 1877 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.82□□□□□ -1.161e-8■■■■□ 24
RTN3-202ENST00000339997 C17orf112F2Z3M2 114 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 EIF3GO75821 320 aaKnown RBP eCLIP7.82□□□□□ -1.161e-11■■■□□ 15.7
RTN3-202ENST00000339997 OR5G3P0C626 314 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 GLB1P16278 677 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 TCN2P20062 427 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 ENPP1P22413 925 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 DCDP81605 110 aaKnown RBP7.82□□□□□ -1.16
RTN3-202ENST00000339997 COL19A1Q14993 1142 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 C6orf201Q7Z4U5 140 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 FBXL14Q8N1E6 418 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 OR5B3Q8NH48 314 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 ZNF331Q9NQX6 463 aaPredicted RBP7.82□□□□□ -1.16
RTN3-202ENST00000339997 MIOXQ9UGB7 285 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 SERGEFQ9UGK8 458 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 NDRG3Q9UGV2 375 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 RCL1Q9Y2P8 373 aaKnown RBP7.82□□□□□ -1.16
RTN3-202ENST00000339997 LRP12Q9Y561 859 aa7.82□□□□□ -1.16
RTN3-202ENST00000339997 ZFC3H1O60293 1989 aaKnown RBP7.82□□□□□ -1.16
RTN3-202ENST00000339997 FAM24AA6NFZ4 105 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 SNRPCP09234 159 aaKnown RBP7.81□□□□□ -1.16
RTN3-202ENST00000339997 ADRA2CP18825 462 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 PRDX4Q13162 271 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 OR8B8Q15620 311 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 NCR3LG1Q68D85 454 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 LAIR1Q6GTX8 287 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 ZNF429Q86V71 674 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 SLC39A7Q92504 469 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 SCPEP1Q9HB40 452 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 THAP10Q9P2Z0 257 aaPredicted RBP7.81□□□□□ -1.16
RTN3-202ENST00000339997 MRPS2Q9Y399 296 aaKnown RBP7.81□□□□□ -1.16
RTN3-202ENST00000339997 OR51B4Q9Y5P0 310 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 R4GN57 208 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 ZNHIT1O43257 154 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 CXCL13O43927 109 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 SLC6A1P30531 599 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 FGF9P31371 208 aaPredicted RBP7.81□□□□□ -1.16
RTN3-202ENST00000339997 CDKN2AP42771 156 aaKnown RBP7.81□□□□□ -1.16
RTN3-202ENST00000339997 UQCRFS1P47985 274 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 RPL34P49207 117 aaKnown RBP7.81□□□□□ -1.16
RTN3-202ENST00000339997 LIMK1P53667 647 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 TMEM267Q0VDI3 215 aaPredicted RBP7.81□□□□□ -1.16
RTN3-202ENST00000339997 RTL6Q6ICC9 239 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 ROBO4Q8WZ75 1007 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 STACQ99469 402 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 NMES1Q9C002 83 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 RAB33BQ9H082 229 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 FOXJ3Q9UPW0 622 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms