RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 OR5AL1P0C617 328 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 FABP2P12104 132 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 EMP3P54852 163 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 USP22Q9UPT9 525 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 DDX60LQ5H9U9 1706 aaKnown RBP12.94□□□□□ -0.34
COL7A1-201ENST00000328333 A0A1B0GTQ1 180 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 PRSS37A4D1T9 235 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 CLEC2LP0C7M8 214 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 PRSS56P0CW18 603 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 BMP5P22003 454 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 CD96P40200 585 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 LINC00346Q8IVM7 164 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 C17orf78Q8N4C9 275 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 OR8D4Q8NGM9 314 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 PFN4Q8NHR9 129 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 SLAMF6Q96DU3 332 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 TMEM56Q96MV1 263 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 PRRX2Q99811 253 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 C19orf53Q9UNZ5 99 aaPredicted RBP12.94□□□□□ -0.34
COL7A1-201ENST00000328333 A0A1W2PN81 502 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 AQP7P3A6NL99 342 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 CHRNA7P36544 502 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 PDLIM7Q9NR12 457 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 LTBP3Q9NS15 1303 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 MAP1LC3B2A6NCE7 125 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 RBFOX3A6NFN3 312 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 FUT6P51993 359 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 ABHD17CQ6PCB6 329 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 Q6ZSR9 355 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 AGBL5Q8NDL9 886 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 FIZ1Q96SL8 496 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 MAP1LC3BQ9GZQ8 125 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 MMP24Q9Y5R2 645 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 SIPA1L3O60292 1781 aaPredicted RBP12.94□□□□□ -0.34
COL7A1-201ENST00000328333 ZNF542PQ5EBM4 170 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 ZDHHC23Q8IYP9 409 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 OR5AU1Q8NGC0 362 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 MZB1Q8WU39 189 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 M0QZ24 198 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 LAMTOR5O43504 91 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 SLC6A1P30531 599 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 OR2A2Q6IF42 318 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 TM4SF18Q96CE8 201 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 CGGBP1Q9UFW8 167 aaPredicted RBP12.94□□□□□ -0.34
COL7A1-201ENST00000328333 PLXNB2O15031 1838 aa12.94□□□□□ -0.34
COL7A1-201ENST00000328333 KIAA1551Q9HCM1 1747 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 CXorf65A6NEN9 183 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 ZNF737O75373 536 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 GPANK1O95872 356 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 PTGFRP43088 359 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 OR1C1Q15619 314 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 DUSP5Q16690 384 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 USP53Q70EK8 1073 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 PRSS3P2Q8NHM4 247 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 C5orf52A6NGY3 159 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 LINC01387J3KSC0 135 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 HS3ST1O14792 307 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 POLR2IP36954 125 aaKnown RBP12.93□□□□□ -0.34
COL7A1-201ENST00000328333 PSMB2P49721 201 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 SNRPNP63162 240 aaKnown RBP12.93□□□□□ -0.34
COL7A1-201ENST00000328333 FXNQ16595 210 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 PELI1Q96FA3 418 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 FAM234AQ9H0X4 552 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 SELENBP1Q13228 472 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 ZNF511Q8NB15 262 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 MIOXQ9UGB7 285 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 PMS2P1A4D2B8 440 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 TBX19O60806 448 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 DHRS7BQ6IAN0 325 aaPredicted RBP12.93□□□□□ -0.34
COL7A1-201ENST00000328333 EID2BQ96D98 161 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.93□□□□□ -0.34
COL7A1-201ENST00000328333 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.93□□□□□ -0.34
COL7A1-201ENST00000328333 NCKAP5O14513 1909 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 S100A4P26447 101 aaKnown RBP12.93□□□□□ -0.34
COL7A1-201ENST00000328333 NEURL2Q9BR09 285 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 GPR84Q9NQS5 396 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 A0A1B0GX78 115 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 TARM1B6A8C7 271 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 CD1CP29017 333 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 DCTDP32321 178 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 BVESQ8NE79 360 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 SPSB1Q96BD6 273 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 GMPPAQ96IJ6 420 aaPredicted RBP12.93□□□□□ -0.34
COL7A1-201ENST00000328333 LAT2Q9GZY6 243 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 HES4Q9HCC6 221 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 ZNF275Q9NSD4 429 aaPredicted RBP12.93□□□□□ -0.34
COL7A1-201ENST00000328333 KLF7O75840 302 aaPredicted RBP12.93□□□□□ -0.34
COL7A1-201ENST00000328333 OR52N4Q8NGI2 321 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 ST3GAL6Q9Y274 331 aa12.93□□□□□ -0.34
COL7A1-201ENST00000328333 CYB561P49447 251 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 SOX4Q06945 474 aaPredicted RBP12.92□□□□□ -0.34
COL7A1-201ENST00000328333 PRSS45Q7RTY3 260 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 OR4F17Q8NGA8 305 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 MARCH1Q8TCQ1 289 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 CRYGNQ8WXF5 182 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 A6NL46 340 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 DNPH1O43598 174 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 CLN3Q13286 438 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 SCGB1D4Q6XE38 83 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 CPEB2Q7Z5Q1 589 aaKnown RBP12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms