RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 OR11G2Q8NGC1 345 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 OR4N2Q8NGD1 307 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 OR10J5Q8NHC4 309 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 MARCH1Q8TCQ1 289 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 MAP1LC3CQ9BXW4 147 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 RNF122Q9H9V4 155 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 ZMIZ1Q9ULJ6 1067 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 TCRBV16S1A1N1A0A5B0 115 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 KLRG2A4D1S0 409 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 CLEC18AA5D8T8 446 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF840PA6NDX5 716 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 MKRN2OSH3BPM6 223 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 TNFP01375 233 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 HIST1H1DP16402 221 aaKnown RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 CHRNB4P30926 498 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 GNG4P50150 75 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 PPOXP50336 477 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 DEFB134Q4QY38 66 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 CLEC18CQ8NCF0 446 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 STXBP6Q8NFX7 210 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 ST8SIA1Q92185 356 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 TOX2Q96NM4 488 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM147Q9BVK8 224 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 KLK11Q9UBX7 282 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 HS3ST2Q9Y278 367 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 ANKRD30BLA7E2S9 258 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 RTCAO00442 366 aaKnown RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 HIST1H1CP16403 213 aaKnown RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 SRSF5Q13243 272 aaKnown RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 VGLL4Q14135 290 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 SPNS2Q8IVW8 549 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 DIO2Q92813 273 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 GALNT14Q96FL9 552 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM167BQ9NRX6 74 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 CISD1Q9NZ45 108 aaKnown RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 SERTAD3Q9UJW9 196 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 TRAV39A0A0B4J263 110 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 CTXND1A0A1B0GTU2 59 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 GYPBP06028 91 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 FCGR2AP12318 317 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 ICAM2P13598 275 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 FSTP19883 344 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 GNG10P50151 68 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 OR7A5Q15622 319 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 C9orf131Q5VYM1 1079 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 NUFIP2Q7Z417 695 aaKnown RBP4.21□□□□□ -1.73
SCN1A-220ENST00000641603 OR4N5Q8IXE1 308 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 NMNAT3Q96T66 252 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 IKZF5Q9H5V7 419 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 BCAS3Q9H6U6 928 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 RPH3ALQ9UNE2 315 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 A0A1B0GW64 132 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 CXCL2P19875 107 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 F2RP25116 425 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 PPICP45877 212 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 FAM219AQ8IW50 185 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 OR52L2PQ8NGH6 319 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 OR10G8Q8NGN5 311 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 MRGPRDQ8TDS7 321 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 PELI1Q96FA3 418 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 YBX2Q9Y2T7 364 aaKnown RBP4.21□□□□□ -1.73
SCN1A-220ENST00000641603 MMACHCQ9Y4U1 282 aa4.21□□□□□ -1.73
SCN1A-220ENST00000641603 A0A0G2JLL6 359 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-220ENST00000641603 A0A0J9YY10 115 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 ORM1P02763 201 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 GLULP15104 373 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 HOXD9P28356 352 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-220ENST00000641603 RABIFP47224 123 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 PNLIPRP2P54317 469 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 PRRT2Q7Z6L0 340 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-220ENST00000641603 GLRX5Q86SX6 157 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 SMIM8Q96KF7 97 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 CTSVO60911 334 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 STC2O76061 302 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 ACTL6BO94805 426 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 PTNP21246 168 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 NPBWR1P48145 328 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 Q6ZVU0 165 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 NIT1Q86X76 327 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 OR6X1Q8NH79 312 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 ROBO4Q8WZ75 1007 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 SMOC1Q9H4F8 434 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 DNAJC4Q9NNZ3 241 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 MPDU1O75352 247 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 PRKRAO75569 313 aaKnown RBP4.21□□□□□ -1.74
SCN1A-220ENST00000641603 ARG1P05089 322 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 CST5P28325 142 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-220ENST00000641603 EPHA8P29322 1005 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-220ENST00000641603 TNFSF10P50591 281 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 RHOBP62745 196 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 OR2V2Q96R30 315 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 SGIP1Q9BQI5 828 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 VN1R3Q9BXE9 311 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 MS4A7Q9GZW8 240 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-220ENST00000641603 GLIPR2Q9H4G4 154 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 ELOVL2Q9NXB9 296 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 ABT1Q9ULW3 272 aaKnown RBP4.21□□□□□ -1.74
SCN1A-220ENST00000641603 COL22A1Q8NFW1 1626 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-220ENST00000641603 FGF16O43320 207 aa4.21□□□□□ -1.74
SCN1A-220ENST00000641603 OR5AL1P0C617 328 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms