RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	GSK3A	P49840	483 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	ZNF81	P51508	661 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	TDGF1P3	P51864	188 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	TAS2R19	P59542	299 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	ZMYND11	Q15326	602 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	C1QTNF12	Q5T7M4	302 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	NSUN5P2	Q63ZY6	315 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	ASPHD2	Q6ICH7	369 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	OR7E24	Q6IFN5	339 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	FOXL2NB	Q6ZUU3	175 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	LYPD6	Q86Y78	171 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	ZNF100	Q8IYN0	542 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	OR4C16	Q8NGL9	310 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	CPT1C	Q8TCG5	803 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	CCDC107	Q8WV48	283 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	GCDH	Q92947	438 aa	Predicted RBP	10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	MS4A3	Q96HJ5	214 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	C1orf198	Q9H425	327 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	MOB1A	Q9H8S9	216 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	G6PC2	Q9NQR9	355 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	MRPL15	Q9P015	296 aa	Known RBP	10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	PIPOX	Q9P0Z9	390 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	MGAT4C	Q9UBM8	478 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	EIF3K	Q9UBQ5	218 aa	Known RBP	10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	FBLN5	Q9UBX5	448 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	UBQLN2	Q9UHD9	624 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	OR52A1	Q9UKL2	312 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	SLC22A13	Q9Y226	551 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	MAB21L2	Q9Y586	359 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	TLN1	Q9Y490	2541 aa	Known RBP	10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	TMEM272	A0A1B0GTI8	110 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	TMIGD3	P0DMS9	266 aa	Predicted RBP	10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	MSR1	P21757	451 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	MPZ	P25189	248 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	HSD11B1	P28845	292 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	AP2S1	P53680	142 aa	Predicted RBP	10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	P2RX3	P56373	397 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	PSMA6	P60900	246 aa	Known RBP	10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	LSM6	P62312	80 aa	Known RBP	10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	MRPS34	P82930	218 aa	Known RBP	10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	MFGE8	Q08431	387 aa	Predicted RBP	10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	STK11	Q15831	433 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	GRK1	Q15835	563 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	SGCA	Q16586	387 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	TSPO2	Q5TGU0	170 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	OTP	Q5XKR4	325 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	FAM214B	Q7L5A3	538 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	NUFIP2	Q7Z417	695 aa	Known RBP	10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	FAM57A	Q8TBR7	257 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	ALKBH3	Q96Q83	286 aa	Predicted RBP	10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	UQCC2	Q9BRT2	126 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	NELFA	Q9H3P2	528 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	GPR35	Q9HC97	309 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	ASF1B	Q9NVP2	202 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	ZNF69	Q9UC07	566 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	CYB5R1	Q9UHQ9	305 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	POLR1D	Q9Y2S0	133 aa		10.24	□□□□□ -0.77
VRK3-223	ENST00000601341	TRAV18	A0A075B6X5	111 aa		10.23	□□□□□ -0.77
VRK3-223	ENST00000601341	LEUTX	A8MZ59	168 aa		10.23	□□□□□ -0.77
VRK3-223	ENST00000601341	ZNF587B	E7ETH6	402 aa		10.23	□□□□□ -0.77
VRK3-223	ENST00000601341	PYCARD-AS1	I3L0S3	204 aa		10.23	□□□□□ -0.77
VRK3-223	ENST00000601341		M0R233	179 aa		10.23	□□□□□ -0.77
VRK3-223	ENST00000601341	IGHV3-9	P01782	118 aa		10.23	□□□□□ -0.77
VRK3-223	ENST00000601341	STEAP1B	Q6NZ63	245 aa		10.23	□□□□□ -0.77
VRK3-223	ENST00000601341	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	10.23	□□□□□ -0.77
VRK3-223	ENST00000601341	CD163	Q86VB7	1156 aa		10.23	□□□□□ -0.77
VRK3-223	ENST00000601341	FTMT	Q8N4E7	242 aa		10.23	□□□□□ -0.77
VRK3-223	ENST00000601341	OR13C3	Q8NGS6	347 aa		10.23	□□□□□ -0.77
VRK3-223	ENST00000601341	OR2AJ1	Q8NGZ0	328 aa		10.23	□□□□□ -0.77
VRK3-223	ENST00000601341	ZNF837	Q96EG3	531 aa	Predicted RBP	10.23	□□□□□ -0.77
VRK3-223	ENST00000601341	GINS4	Q9BRT9	223 aa		10.23	□□□□□ -0.77
VRK3-223	ENST00000601341	SLC7A10	Q9NS82	523 aa		10.23	□□□□□ -0.77
VRK3-223	ENST00000601341	EMC9	Q9Y3B6	208 aa		10.23	□□□□□ -0.77
VRK3-223	ENST00000601341	TMEM269	A0A1B0GVZ9	245 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	LOC107986453	A0A1B0GWG9	222 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	METTL21EP	A6NDL7	271 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	RPL36A-HNRNPH2	H7BZ11	118 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	PRRG2	O14669	202 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	CD74	P04233	296 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	ERCC1	P07992	297 aa	Predicted RBP	10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	GTF2F2	P13984	249 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	NFYA	P23511	347 aa	Predicted RBP	10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	OR3A2	P47893	321 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	EFNB2	P52799	333 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	RAB14	P61106	215 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	TSPAN5	P62079	268 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	FAM189A2	Q15884	450 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	CEACAM16	Q2WEN9	425 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	GLYATL3	Q5SZD4	288 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	C1orf185	Q5T7R7	199 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	FAM27B	Q5VT28	67 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	GFRAL	Q6UXV0	394 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	DCXR	Q7Z4W1	244 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	HIST2H2AB	Q8IUE6	130 aa	Predicted RBP	10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	LINC00346	Q8IVM7	164 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	GCNT2	Q8N0V5	402 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	C9orf106	Q8NAJ2	232 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	NABP1	Q96AH0	204 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	FOXB1	Q99853	325 aa		10.22	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms