RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.52□□□□□ -0.25
TRIM28-213ENST00000598355 RHBDD3Q9Y3P4 386 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 MPC1Q9Y5U8 109 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 R4GMQ9 66 aa13.52□□□□□ -0.25
TRIM28-213ENST00000598355 A0A1W2PQL4 384 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-213ENST00000598355 SLC16A6O15403 523 aa13.51□□□□□ -0.25
TRIM28-213ENST00000598355 ENTPD6O75354 484 aa13.51□□□□□ -0.25
TRIM28-213ENST00000598355 GATA3P23771 443 aa13.51□□□□□ -0.25
TRIM28-213ENST00000598355 CFHR2P36980 270 aa13.51□□□□□ -0.25
TRIM28-213ENST00000598355 MTNR1AP48039 350 aa13.51□□□□□ -0.25
TRIM28-213ENST00000598355 SEC61A1P61619 476 aaKnown RBP13.51□□□□□ -0.25
TRIM28-213ENST00000598355 ZNF154Q13106 437 aa13.51□□□□□ -0.25
TRIM28-213ENST00000598355 FAM201AQ5SY85 155 aa13.51□□□□□ -0.25
TRIM28-213ENST00000598355 ZBTB37Q5TC79 503 aa13.51□□□□□ -0.25
TRIM28-213ENST00000598355 C11orf53Q8IXP5 236 aa13.51□□□□□ -0.25
TRIM28-213ENST00000598355 ENTHD1Q8IYW4 607 aa13.51□□□□□ -0.25
TRIM28-213ENST00000598355 ELMOD2Q8IZ81 293 aa13.51□□□□□ -0.25
TRIM28-213ENST00000598355 OR11L1Q8NGX0 322 aa13.51□□□□□ -0.25
TRIM28-213ENST00000598355 HPSE2Q8WWQ2 592 aa13.51□□□□□ -0.25
TRIM28-213ENST00000598355 TMEM246Q9BRR3 403 aa13.51□□□□□ -0.25
TRIM28-213ENST00000598355 PAPOLGQ9BWT3 736 aaKnown RBP13.51□□□□□ -0.25
TRIM28-213ENST00000598355 FGF23Q9GZV9 251 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-213ENST00000598355 UFSP2Q9NUQ7 469 aa13.51□□□□□ -0.25
TRIM28-213ENST00000598355 UBAP1Q9NZ09 502 aa13.51□□□□□ -0.25
TRIM28-213ENST00000598355 LRCH1Q9Y2L9 728 aa13.51□□□□□ -0.25
TRIM28-213ENST00000598355 GMPPBQ9Y5P6 360 aa13.51□□□□□ -0.25
TRIM28-213ENST00000598355 LOC110117498-PIK3R3F6TDL0 507 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 MAGEB4O15481 346 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-213ENST00000598355 FOXH1O75593 365 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 SULT1C4O75897 302 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 APOL3O95236 402 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 LHBP01229 141 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 WNT2P09544 360 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 SRD5A1P18405 259 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 CCL1P22362 96 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 ZFP36P26651 326 aaKnown RBP13.5□□□□□ -0.25
TRIM28-213ENST00000598355 IL5RAQ01344 420 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 ZNF85Q03923 595 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 FAM76BQ5HYJ3 339 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 C1orf229Q6ZS94 237 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-213ENST00000598355 GALNT4Q8N4A0 578 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 GCSAMQ8N6F7 178 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 OR1M1Q8NGA1 313 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 OR8S1Q8NH09 359 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 RHOXF1Q8NHV9 184 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 RNF166Q96A37 237 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-213ENST00000598355 DACT3Q96B18 629 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-213ENST00000598355 TMPRSS13Q9BYE2 586 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 RNPEPL1Q9HAU8 725 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 GPR84Q9NQS5 396 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 FAM118AQ9NWS6 357 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 RNF7Q9UBF6 113 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 PPIAL4AQ9Y536 164 aa13.5□□□□□ -0.25
TRIM28-213ENST00000598355 FBN1P35555 2871 aaKnown RBP13.5□□□□□ -0.25
TRIM28-213ENST00000598355 A0A0G2JMP0 313 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 A0A0X1KG70 313 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 ZNF816-ZNF321PA0A0X1KG74 233 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 A0A1B0GTI1 187 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 DHRS7CA6NNS2 312 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 J3QLI3 93 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 TNFRSF13BO14836 293 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-213ENST00000598355 MPZL2O60487 215 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 DHRS3O75911 302 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 IRF2P14316 349 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 GNALP38405 381 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 PSMB10P40306 273 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 MAP2K3P46734 347 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 HOXA4Q00056 320 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-213ENST00000598355 PAX2Q02962 417 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 PRDX4Q13162 271 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 PLEKHG7Q6ZR37 379 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 DCDC5Q6ZRR9 648 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 OR4M2Q8NGB6 313 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 OR51E1Q8TCB6 317 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 OR5P3Q8WZ94 311 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 PPP1R14AQ96A00 147 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 TBX5Q99593 518 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 C8orf4Q9NR00 106 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 SMPD3Q9NY59 655 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-213ENST00000598355 MIOXQ9UGB7 285 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 OR52A1Q9UKL2 312 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 EXOGQ9Y2C4 368 aaKnown RBP13.49□□□□□ -0.25
TRIM28-213ENST00000598355 SNX5Q9Y5X3 404 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 V9GYS6 101 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 COL6A5A8TX70 2615 aa13.49□□□□□ -0.25
TRIM28-213ENST00000598355 LOC100130705A0A1B0GUX0 176 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 METTL15A6NJ78 407 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 TMEM210A6NLX4 147 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 ANXA2P2A6NMY6 339 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 LGALS8O00214 317 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 CASQ2O14958 399 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-213ENST00000598355 ZNF205O95201 554 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 BAG2O95816 211 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 AVPP01185 164 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 FSHBP01225 129 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 KRT8P05787 483 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 CSNK2BP67870 215 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 ACTC1P68032 377 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 ACTA1P68133 377 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 ZNF91Q05481 1191 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms