RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 DPY19L4Q7Z388 723 aa12.63□□□□□ -0.39
VPS53-218ENST00000575207 NOL4LQ96MY1 436 aaPredicted RBP12.63□□□□□ -0.39
VPS53-218ENST00000575207 GGT3PA6NGU5 568 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 M0QZK8 103 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 LCATP04180 440 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 VIMP08670 466 aaKnown RBP12.62□□□□□ -0.39
VPS53-218ENST00000575207 ACSM4P0C7M7 580 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 SLC35B1P78383 322 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 FADDQ13158 208 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 MINOS1Q5TGZ0 78 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 TMEM200BQ69YZ2 307 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 LINC00336Q6ZUF6 198 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.62□□□□□ -0.39
VPS53-218ENST00000575207 DRAM1Q8N682 238 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 TMEM185AQ8NFB2 350 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 OR6T1Q8NGN1 323 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 OR13D1Q8NGV5 346 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 OR8S1Q8NH09 359 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 PFN4Q8NHR9 129 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 SGTBQ96EQ0 304 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 WDR13Q9H1Z4 485 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 GRPEL1Q9HAV7 217 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 KIAA1456Q9P272 454 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 MINOS1-NBL1R4GNA1 71 aa12.62□□□□□ -0.39
VPS53-218ENST00000575207 CFAP77Q6ZQR2 320 aa12.61□□□□□ -0.39
VPS53-218ENST00000575207 SGPP2Q8IWX5 399 aa12.61□□□□□ -0.39
VPS53-218ENST00000575207 ZNRF1Q8ND25 227 aa12.61□□□□□ -0.39
VPS53-218ENST00000575207 GJC3Q8NFK1 279 aa12.61□□□□□ -0.39
VPS53-218ENST00000575207 OR1M1Q8NGA1 313 aa12.61□□□□□ -0.39
VPS53-218ENST00000575207 LIPHQ8WWY8 451 aa12.61□□□□□ -0.39
VPS53-218ENST00000575207 ZBTB18Q99592 522 aa12.61□□□□□ -0.39
VPS53-218ENST00000575207 RETNQ9HD89 108 aa12.61□□□□□ -0.39
VPS53-218ENST00000575207 RPS6KA6Q9UK32 745 aa12.61□□□□□ -0.39
VPS53-218ENST00000575207 POLR1DQ9Y2S0 133 aa12.61□□□□□ -0.39
VPS53-218ENST00000575207 TEX13CA0A0J9YWL9 993 aa12.6□□□□□ -0.39
VPS53-218ENST00000575207 NUPR2A6NF83 97 aa12.6□□□□□ -0.39
VPS53-218ENST00000575207 F5H5K5 113 aa12.6□□□□□ -0.39
VPS53-218ENST00000575207 SERPINB7O75635 380 aa12.6□□□□□ -0.39
VPS53-218ENST00000575207 RPLP1P05386 114 aaKnown RBP12.6□□□□□ -0.39
VPS53-218ENST00000575207 CCL3L1P16619 93 aa12.6□□□□□ -0.39
VPS53-218ENST00000575207 LBPP18428 481 aa12.6□□□□□ -0.39
VPS53-218ENST00000575207 CD24P25063 80 aa12.6□□□□□ -0.39
VPS53-218ENST00000575207 CTXN1P60606 82 aa12.6□□□□□ -0.39
VPS53-218ENST00000575207 RPL31P62899 125 aaKnown RBP12.6□□□□□ -0.39
VPS53-218ENST00000575207 HIST1H3AP68431 136 aa12.6□□□□□ -0.39
VPS53-218ENST00000575207 CDK6Q00534 326 aa12.6□□□□□ -0.39
VPS53-218ENST00000575207 HIST2H3PS2Q5TEC6 136 aa12.6□□□□□ -0.39
VPS53-218ENST00000575207 TMEM65Q6PI78 240 aa12.6□□□□□ -0.39
VPS53-218ENST00000575207 HIST2H3AQ71DI3 136 aa12.6□□□□□ -0.39
VPS53-218ENST00000575207 TSPYL5Q86VY4 417 aaPredicted RBP12.6□□□□□ -0.39
VPS53-218ENST00000575207 LNX2Q8N448 690 aa12.6□□□□□ -0.39
VPS53-218ENST00000575207 PRSS27Q9BQR3 290 aa12.6□□□□□ -0.39
VPS53-218ENST00000575207 HIPK2Q9H2X6 1198 aa12.6□□□□□ -0.39
VPS53-218ENST00000575207 C17orf98A8MV24 154 aa12.59□□□□□ -0.39
VPS53-218ENST00000575207 CDIPTO14735 213 aa12.59□□□□□ -0.39
VPS53-218ENST00000575207 IL6P05231 212 aa12.59□□□□□ -0.39
VPS53-218ENST00000575207 KRT4P19013 534 aa12.59□□□□□ -0.39
VPS53-218ENST00000575207 AQP1P29972 269 aa12.59□□□□□ -0.39
VPS53-218ENST00000575207 SDHAP31040 664 aa12.59□□□□□ -0.39
VPS53-218ENST00000575207 POU3F4P49335 361 aa12.59□□□□□ -0.39
VPS53-218ENST00000575207 ZNF92Q03936 586 aa12.59□□□□□ -0.39
VPS53-218ENST00000575207 DYNC1I2Q13409 638 aaKnown RBP12.59□□□□□ -0.39
VPS53-218ENST00000575207 C8orf74Q6P047 294 aa12.59□□□□□ -0.39
VPS53-218ENST00000575207 TEX38Q6PEX7 206 aa12.59□□□□□ -0.39
VPS53-218ENST00000575207 CPLX4Q7Z7G2 160 aa12.59□□□□□ -0.39
VPS53-218ENST00000575207 NAA40Q86UY6 237 aa12.59□□□□□ -0.39
VPS53-218ENST00000575207 CALHM1Q8IU99 346 aa12.59□□□□□ -0.39
VPS53-218ENST00000575207 OR6Q1Q8NGQ2 317 aa12.59□□□□□ -0.39
VPS53-218ENST00000575207 FAM110AQ9BQ89 295 aa12.59□□□□□ -0.39
VPS53-218ENST00000575207 TLNRD1Q9H1K6 362 aa12.59□□□□□ -0.39
VPS53-218ENST00000575207 CLIC1O00299 241 aa12.58□□□□□ -0.4
VPS53-218ENST00000575207 TIPRLO75663 272 aa12.58□□□□□ -0.4
VPS53-218ENST00000575207 GABRA2P47869 451 aa12.58□□□□□ -0.4
VPS53-218ENST00000575207 IL18R1Q13478 541 aa12.58□□□□□ -0.4
VPS53-218ENST00000575207 MPP2Q14168 576 aa12.58□□□□□ -0.4
VPS53-218ENST00000575207 C6orf10Q5SRN2 563 aa12.58□□□□□ -0.4
VPS53-218ENST00000575207 GCNT6Q5T4J0 391 aa12.58□□□□□ -0.4
VPS53-218ENST00000575207 RBM45Q8IUH3 476 aaKnown RBP12.58□□□□□ -0.4
VPS53-218ENST00000575207 GLB1L2Q8IW92 636 aa12.58□□□□□ -0.4
VPS53-218ENST00000575207 SMYD1Q8NB12 490 aa12.58□□□□□ -0.4
VPS53-218ENST00000575207 OR10Z1Q8NGY1 313 aa12.58□□□□□ -0.4
VPS53-218ENST00000575207 EME1Q96AY2 570 aa12.58□□□□□ -0.4
VPS53-218ENST00000575207 PPP1R3EQ9H7J1 279 aa12.58□□□□□ -0.4
VPS53-218ENST00000575207 AIG1Q9NVV5 245 aa12.58□□□□□ -0.4
VPS53-218ENST00000575207 OR2AT4A6NND4 320 aa12.57□□□□□ -0.4
VPS53-218ENST00000575207 SAP30O75446 220 aa12.57□□□□□ -0.4
VPS53-218ENST00000575207 BRS3P32247 399 aa12.57□□□□□ -0.4
VPS53-218ENST00000575207 CAPZA1P52907 286 aa12.57□□□□□ -0.4
VPS53-218ENST00000575207 DLX6P56179 175 aa12.57□□□□□ -0.4
VPS53-218ENST00000575207 SLC2A7Q6PXP3 512 aa12.57□□□□□ -0.4
VPS53-218ENST00000575207 C4orf33Q8N1A6 199 aa12.57□□□□□ -0.4
VPS53-218ENST00000575207 RNF152Q8N8N0 203 aa12.57□□□□□ -0.4
VPS53-218ENST00000575207 OR11H1Q8NG94 326 aa12.57□□□□□ -0.4
VPS53-218ENST00000575207 OR56B2PQ8NGI1 322 aa12.57□□□□□ -0.4
VPS53-218ENST00000575207 OR2AE1Q8NHA4 323 aa12.57□□□□□ -0.4
VPS53-218ENST00000575207 C4orf3Q8WVX3 66 aa12.57□□□□□ -0.4
VPS53-218ENST00000575207 IFT81Q8WYA0 676 aa12.57□□□□□ -0.4
VPS53-218ENST00000575207 STMN2Q93045 179 aa12.57□□□□□ -0.4
VPS53-218ENST00000575207 RERGLQ9H628 205 aa12.57□□□□□ -0.4
VPS53-218ENST00000575207 NLKQ9UBE8 527 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms