RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ZFP1Q6P2D0 407 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 DEGS2Q6QHC5 323 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 BTNL3Q6UXE8 466 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 LRRN1Q6UXK5 716 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 ASRGL1Q7L266 308 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 MEPCEQ7L2J0 689 aaKnown RBP6.8□□□□□ -1.32
VPS53-214ENST00000572607 COMMD2Q86X83 199 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 TCEANCQ8N8B7 351 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 BOLLQ8N9W6 283 aaKnown RBP6.8□□□□□ -1.32
VPS53-214ENST00000572607 OR8B3Q8NGG8 313 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 NANPQ8TBE9 248 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 FAM81AQ8TBF8 368 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 Q8TCH9 128 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 ZNF418Q8TF45 676 aaPredicted RBP6.8□□□□□ -1.32
VPS53-214ENST00000572607 DVL3Q92997 716 aaPredicted RBP6.8□□□□□ -1.32
VPS53-214ENST00000572607 SPSB4Q96A44 273 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 SGK3Q96BR1 496 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 NEIL1Q96FI4 390 aaPredicted RBP6.8□□□□□ -1.32
VPS53-214ENST00000572607 HIST1H2AAQ96QV6 131 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 OR8B2Q96RD0 313 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 AMELYQ99218 206 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 TEAD3Q99594 435 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 MICU1Q9BPX6 476 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 RBM4BQ9BQ04 359 aaKnown RBP6.8□□□□□ -1.32
VPS53-214ENST00000572607 MRI1Q9BV20 369 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 PAPOLGQ9BWT3 736 aaKnown RBP6.8□□□□□ -1.32
VPS53-214ENST00000572607 RIBC2Q9H4K1 309 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 C7orf69Q9H7B7 122 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 ABCB9Q9NP78 766 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 G6PC2Q9NQR9 355 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 C1orf123Q9NWV4 160 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 RNF7Q9UBF6 113 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 IKZF2Q9UKS7 526 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 OAZ3Q9UMX2 235 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 LRCH1Q9Y2L9 728 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 LRP12Q9Y561 859 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 MALRD1Q5VYJ5 2156 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 LOC105371242A0A075B767 164 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 hCG_38984A0A1B0GV85 526 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 TMEM269A0A1B0GVZ9 245 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 C5orf63A6NC05 138 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 CCDC182A6NF36 153 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 ACOD1A6NK06 481 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 ZAR1LA6NP61 321 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 A8MXK9 166 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 F5H0A9 414 aaPredicted RBP6.79□□□□□ -1.32
VPS53-214ENST00000572607 SLC2A5P22732 501 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 ATP6V1E1P36543 226 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 RIDAP52758 137 aaKnown RBP6.79□□□□□ -1.32
VPS53-214ENST00000572607 CDC42P60953 191 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 HNRNPA0Q13151 305 aaKnown RBP6.79□□□□□ -1.32
VPS53-214ENST00000572607 KRTAP24-1Q3LI83 254 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 ZNF404Q494X3 552 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 ARMCX4Q5H9R4 360 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 C12orf73Q69YU5 71 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 DCDC5Q6ZRR9 648 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 Q6ZS46 218 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 KCTD8Q6ZWB6 473 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 C1QL2Q7Z5L3 287 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 THAP5Q7Z6K1 395 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 SLC35F2Q8IXU6 374 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 DEFB108BQ8NET1 73 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 TMEM163Q8TC26 289 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 PYDC1Q8WXC3 89 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 RAB3IPQ96QF0 476 aaPredicted RBP6.79□□□□□ -1.32
VPS53-214ENST00000572607 OR8B4Q96RC9 309 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 IL4I1Q96RQ9 567 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 CIB1Q99828 191 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 RTL8AQ9BWD3 113 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 SSBP3Q9BWW4 388 aaPredicted RBP6.79□□□□□ -1.32
VPS53-214ENST00000572607 TMPRSS13Q9BYE2 586 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 MOB1AQ9H8S9 216 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 TMEM165Q9HC07 324 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 IMPAD1Q9NX62 359 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 CLN8Q9UBY8 286 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 WARS2Q9UGM6 360 aaKnown RBP6.79□□□□□ -1.32
VPS53-214ENST00000572607 GTF2A1LQ9UNN4 478 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 MPC1Q9Y5U8 109 aa6.79□□□□□ -1.32
VPS53-214ENST00000572607 A0A0A6YYJ9 748 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 TRAV38-1A0A0B4J264 116 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 ZNF816-ZNF321PA0A0X1KG74 233 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 OOEPA6NGQ2 149 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 LGALS8O00214 317 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 NDUFA2O43678 99 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 MTRF1O75570 445 aaKnown RBP6.78□□□□□ -1.32
VPS53-214ENST00000572607 PTBP3O95758 552 aaKnown RBP6.78□□□□□ -1.32
VPS53-214ENST00000572607 GHRHP01286 108 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 KRT8P05787 483 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 WNT2P09544 360 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 ZNF12P17014 697 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 EPHA1P21709 976 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 FPR2P25090 351 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 ZFP36P26651 326 aaKnown RBP6.78□□□□□ -1.32
VPS53-214ENST00000572607 DCTDP32321 178 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 CD80P33681 288 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 PMELP40967 661 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 PITPNBP48739 271 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 NPY4RP50391 375 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 HCCSP53701 268 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 SEC61A1P61619 476 aaKnown RBP6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms